Glyma.13g119600

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Report for Sequence Feature Glyma.13g119600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23221497
stop:	23224867
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g119600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17470.1	AT	Ca2+-activated RelA/spot homolog	JGI	N/A	IEA
GO:0015969	GO-bp	guanosine tetraphosphate metabolic process	EnsemblGenomes	N/A	IEA
GO:0015969	GO-bp	guanosine tetraphosphate metabolic process	JGI	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	EnsemblGenomes	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	JGI	N/A	IEA
KOG1157	KOG	Predicted guanosine polyphosphate pyrophosphohydrolase/synthase	JGI	N/A	IEA
PTHR21262	Panther	GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE	JGI	N/A	IEA
PF00036	PFAM	EF hand	JGI	N/A	IEA
PF04607	PFAM	Region found in RelA / SpoT proteins	JGI	N/A	IEA
GN7V-53683	SoyCyc9-rxn	GTP diphosphokinase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g119600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g119600 not represented in the dataset	Glyma.13g119600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.13g119600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g18000	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g119600

Limit To All Plant Sequences

>Glyma.13g119600.2 sequence-type=transcript locus=Glyma.13g119600 ID=Glyma.13g119600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAACAACCACAAACATTGTTGTGGAGAAGAGAGAAAGCAAGCTGAATGGAGGTGTTGCAGTTGCTGGCTTCCGATTTTACCCTCCGCCATTCCCTTTCCAAGCCCACCGTCTCCCTTCCTCCCACTCACTCACTCTCCGTCGTCGTGTTCCGGCGGCGGAGATCACCCTGCGGCGGGCGGTGGTGGGCTCCGCGAGCATGCGCGGTGGAGGTGTCGGAGTCGGAGGGAGGGAAGATGGTGATGGAGCTGGTGGGAGCCTTCAACGAGTTGACGGAGAGAATGAACGTGCTGTCGACGAGCTCTTCGCGTCTTCTGTTTAAGTGCCTCAAACTCTCCATCCCCATCCTGCAGAGCTCTCCTCTCGCTCCCGATGGCCGTTCCCCTCTCTCCAAAGCCTTATCCGTCGCCTTGCTCCTCGCTGATCTCCAATAAATGTGAATGCAGATGGATGCCGAGGTAATCTCTGCTGGGATATTCAGAGCAGTATTGGAGGCGGGTGAGTTGAGCATACATGAAATTCGGAATCAGATGGGTCTAGCCACTGCTCATTTGCTGCACGAGAGTTTGCGGGTGAATAATTTTCCATCCAGAATAGATGTTGTGGATGATGATAATGCTGCTGCATTGAGAAAGTTCTGCCTCACTTACTATGACATCAGGGCTTTGATTCTGGACCTGGCTTTGAAGCTTGACATGATGAGACACCTTGATTATCTGCCCAGATATCAGCAGCAGATTATTTCTATGCAGGTTATGAAGATACATGCTCCTCTTGCTCATGCTGTGGGAACTACCTACTTGTCACTGGAATTGGAAGATCTCTCGTTTCAGTACTTATTTCCTTATTCATATCTTTATGTGGATGCGTGGTTGCGAAGTCATGAGACTGGGGGTGTATCTCTTATTGACATCTACAAGGAGGAACTGCTCCGTAATCTAAAGGCTGATTCCTTGCTTGCTGAACTTGTGGATGATGTCTCGATCAAAGGTCGCTTTAAGAGTCGTTATAGCACAATGAAGAAGCTGTTGAAGGATGGTCGGAAGCCAGAAGATGTGAATGATGTACTTGGGATGCGAGTGATATTGAATCCTAAGGCTGGAGAGAATGCATTAGAGGCTGGAGAGAGAGCATGTTATAGGACTCATCAGATCATCCAATCTATGTGGAAGGAAATCCCTTATCGGACAAAGGATTATATTGCCAGGCCAAAAGCAAATGGATATAAAAGTTTGCATATGGCAGTTGATGTGAGTGAAAATGGTAAGACAAGACCATTGATGGAAATACAGATAAGAACAACTGAAATGGACAGGCTAGCAGTTGGTGGAACAGCTGCTCATTCATTATACAAGGCTGGCCTTACTGATCCTGAGGAGGCAAAGCGTCTGAAGACCATCATGTTGGCTGCAGCTGAATTGGCTGCGCTGCGCCTTAAAGATTTTCCAACAAGTACAAATCATAAAGGAATTGAAATTCACCAGAGGGATAGAGTGTTTCGCCTTCTTGACAAGAACGGAGACGGTAAAATTAGCATTGAGGAACTTACAGAAGTGATGGAGGAGCTTGGTGCACCAGGAGAAGATGCCCGAGAAATGATGCAGCTCCTTGACTCAAATAGTGATGGCTCCCTCAGTTCTGACGAATTCCATATGTTCCAAGAACAGGTTGAGTTGGTGCGTAATTTAGAGGTCCGAGATGATCAATACAAGAAATTATTGGATGAGAAGCTTCATATGGCAGATGAGAGTGGTTTAATTCAAGTTTATAGTAAGGAGTTCGGCAACAGGCTTGCGAGCTAGTGCTTCATCCATTTGAAACGAATGACAGAACAAAACACACTCAATTTACTCCACTTGTGATATGATCATTAAGCTAGAGCCACGCGTAAGTGATGTAATTTCCATGTAAATTAATTAATGACAGAAATTCCAGAGATAAAGAAATTTGCAATATCTTATTTCTGACCTGTTGTTTTATAAGTTAATATTACCATAAACTGTACGCTCCTATAATGAGGATTAATGAACTCTGGTGATGGATAACTATACAAATGGTTCTAAGCATGCTTTACT

Coding sequences of Glyma.13g119600

Limit To All Plant Sequences

>Glyma.13g119600.1 sequence-type=CDS polypeptide=Glyma.13g119600.1.p locus=Glyma.13g119600 ID=Glyma.13g119600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGTGTTGCAGTTGCTGGCTTCCGATTTTACCCTCCGCCATTCCCTTTCCAAGCCCACCGTCTCCCTTCCTCCCACTCACTCACTCTCCGTCGTCGTGTTCCGGCGGCGGAGATCACCCTGCGGCGGGCGGTGGTGGGCTCCGCGAGCATGCGCGGTGGAGGTGTCGGAGTCGGAGGGAGGGAAGATGGTGATGGAGCTGGTGGGAGCCTTCAACGAGTTGACGGAGAGAATGAACGTGCTGTCGACGAGCTCTTCGCGTCTTCTGTTTAAGTGCCTCAAACTCTCCATCCCCATCCTGCAGAGCTCTCCTCTCGCTCCCGATGGCCGTTCCCCTCTCTCCAAAGCCTTATCCGTCGCCTTGCTCCTCGCTGATCTCCAAATGGATGCCGAGGTAATCTCTGCTGGGATATTCAGAGCAGTATTGGAGGCGGGTGAGTTGAGCATACATGAAATTCGGAATCAGATGGGTCTAGCCACTGCTCATTTGCTGCACGAGAGTTTGCGGGTGAATAATTTTCCATCCAGAATAGATGTTGTGGATGATGATAATGCTGCTGCATTGAGAAAGTTCTGCCTCACTTACTATGACATCAGGGCTTTGATTCTGGACCTGGCTTTGAAGCTTGACATGATGAGACACCTTGATTATCTGCCCAGATATCAGCAGCAGATTATTTCTATGCAGGTTATGAAGATACATGCTCCTCTTGCTCATGCTGTGGGAACTACCTACTTGTCACTGGAATTGGAAGATCTCTCGTTTCAGTACTTATTTCCTTATTCATATCTTTATGTGGATGCGTGGTTGCGAAGTCATGAGACTGGGGGTGTATCTCTTATTGACATCTACAAGGAGGAACTGCTCCGTAATCTAAAGGCTGATTCCTTGCTTGCTGAACTTGTGGATGATGTCTCGATCAAAGGTCGCTTTAAGAGTCGTTATAGCACAATGAAGAAGCTGTTGAAGGATGGTCGGAAGCCAGAAGATGTGAATGATGTACTTGGGATGCGAGTGATATTGAATCCTAAGGCTGGAGAGAATGCATTAGAGGCTGGAGAGAGAGCATGTTATAGGACTCATCAGATCATCCAATCTATGTGGAAGGAAATCCCTTATCGGACAAAGGATTATATTGCCAGGCCAAAAGCAAATGGATATAAAAGTTTGCATATGGCAGTTGATGTGAGTGAAAATGGTAAGACAAGACCATTGATGGAAATACAGATAAGAACAACTGAAATGGACAGGCTAGCAGTTGGTGGAACAGCTGCTCATTCATTATACAAGGCTGGCCTTACTGATCCTGAGGAGGCAAAGCGTCTGAAGACCATCATGTTGGCTGCAGCTGAATTGGCTGCGCTGCGCCTTAAAGATTTTCCAACAAGTACAAATCATAAAGGAATTGAAATTCACCAGAGGGATAGAGTGTTTCGCCTTCTTGACAAGAACGGAGACGGTAAAATTAGCATTGAGGAACTTACAGAAGTGATGGAGGAGCTTGGTGCACCAGGAGAAGATGCCCGAGAAATGATGCAGCTCCTTGACTCAAATAGTGATGGCTCCCTCAGTTCTGACGAATTCCATATGTTCCAAGAACAGGTTGAGTTGGTGCGTAATTTAGAGGTCCGAGATGATCAATACAAGAAATTATTGGATGAGAAGCTTCATATGGCAGATGAGAGTGGTTTAATTCAAGTTTATAGTAAGGAGTTCGGCAACAGGCTTGCGAGCTAG

>Glyma.13g119600.2 sequence-type=CDS polypeptide=Glyma.13g119600.2.p locus=Glyma.13g119600 ID=Glyma.13g119600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGATGGATGCCGAGGTAATCTCTGCTGGGATATTCAGAGCAGTATTGGAGGCGGGTGAGTTGAGCATACATGAAATTCGGAATCAGATGGGTCTAGCCACTGCTCATTTGCTGCACGAGAGTTTGCGGGTGAATAATTTTCCATCCAGAATAGATGTTGTGGATGATGATAATGCTGCTGCATTGAGAAAGTTCTGCCTCACTTACTATGACATCAGGGCTTTGATTCTGGACCTGGCTTTGAAGCTTGACATGATGAGACACCTTGATTATCTGCCCAGATATCAGCAGCAGATTATTTCTATGCAGGTTATGAAGATACATGCTCCTCTTGCTCATGCTGTGGGAACTACCTACTTGTCACTGGAATTGGAAGATCTCTCGTTTCAGTACTTATTTCCTTATTCATATCTTTATGTGGATGCGTGGTTGCGAAGTCATGAGACTGGGGGTGTATCTCTTATTGACATCTACAAGGAGGAACTGCTCCGTAATCTAAAGGCTGATTCCTTGCTTGCTGAACTTGTGGATGATGTCTCGATCAAAGGTCGCTTTAAGAGTCGTTATAGCACAATGAAGAAGCTGTTGAAGGATGGTCGGAAGCCAGAAGATGTGAATGATGTACTTGGGATGCGAGTGATATTGAATCCTAAGGCTGGAGAGAATGCATTAGAGGCTGGAGAGAGAGCATGTTATAGGACTCATCAGATCATCCAATCTATGTGGAAGGAAATCCCTTATCGGACAAAGGATTATATTGCCAGGCCAAAAGCAAATGGATATAAAAGTTTGCATATGGCAGTTGATGTGAGTGAAAATGGTAAGACAAGACCATTGATGGAAATACAGATAAGAACAACTGAAATGGACAGGCTAGCAGTTGGTGGAACAGCTGCTCATTCATTATACAAGGCTGGCCTTACTGATCCTGAGGAGGCAAAGCGTCTGAAGACCATCATGTTGGCTGCAGCTGAATTGGCTGCGCTGCGCCTTAAAGATTTTCCAACAAGTACAAATCATAAAGGAATTGAAATTCACCAGAGGGATAGAGTGTTTCGCCTTCTTGACAAGAACGGAGACGGTAAAATTAGCATTGAGGAACTTACAGAAGTGATGGAGGAGCTTGGTGCACCAGGAGAAGATGCCCGAGAAATGATGCAGCTCCTTGACTCAAATAGTGATGGCTCCCTCAGTTCTGACGAATTCCATATGTTCCAAGAACAGGTTGAGTTGGTGCGTAATTTAGAGGTCCGAGATGATCAATACAAGAAATTATTGGATGAGAAGCTTCATATGGCAGATGAGAGTGGTTTAATTCAAGTTTATAGTAAGGAGTTCGGCAACAGGCTTGCGAGCTAG

Predicted protein sequences of Glyma.13g119600

Limit To All Plant Sequences

>Glyma.13g119600.1.p sequence-type=predicted peptide transcript=Glyma.13g119600.1 locus=Glyma.13g119600 ID=Glyma.13g119600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVLQLLASDFTLRHSLSKPTVSLPPTHSLSVVVFRRRRSPCGGRWWAPRACAVEVSESEGGKMVMELVGAFNELTERMNVLSTSSSRLLFKCLKLSIPILQSSPLAPDGRSPLSKALSVALLLADLQMDAEVISAGIFRAVLEAGELSIHEIRNQMGLATAHLLHESLRVNNFPSRIDVVDDDNAAALRKFCLTYYDIRALILDLALKLDMMRHLDYLPRYQQQIISMQVMKIHAPLAHAVGTTYLSLELEDLSFQYLFPYSYLYVDAWLRSHETGGVSLIDIYKEELLRNLKADSLLAELVDDVSIKGRFKSRYSTMKKLLKDGRKPEDVNDVLGMRVILNPKAGENALEAGERACYRTHQIIQSMWKEIPYRTKDYIARPKANGYKSLHMAVDVSENGKTRPLMEIQIRTTEMDRLAVGGTAAHSLYKAGLTDPEEAKRLKTIMLAAAELAALRLKDFPTSTNHKGIEIHQRDRVFRLLDKNGDGKISIEELTEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFHMFQEQVELVRNLEVRDDQYKKLLDEKLHMADESGLIQVYSKEFGNRLAS*

>Glyma.13g119600.2.p sequence-type=predicted peptide transcript=Glyma.13g119600.2 locus=Glyma.13g119600 ID=Glyma.13g119600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQMDAEVISAGIFRAVLEAGELSIHEIRNQMGLATAHLLHESLRVNNFPSRIDVVDDDNAAALRKFCLTYYDIRALILDLALKLDMMRHLDYLPRYQQQIISMQVMKIHAPLAHAVGTTYLSLELEDLSFQYLFPYSYLYVDAWLRSHETGGVSLIDIYKEELLRNLKADSLLAELVDDVSIKGRFKSRYSTMKKLLKDGRKPEDVNDVLGMRVILNPKAGENALEAGERACYRTHQIIQSMWKEIPYRTKDYIARPKANGYKSLHMAVDVSENGKTRPLMEIQIRTTEMDRLAVGGTAAHSLYKAGLTDPEEAKRLKTIMLAAAELAALRLKDFPTSTNHKGIEIHQRDRVFRLLDKNGDGKISIEELTEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFHMFQEQVELVRNLEVRDDQYKKLLDEKLHMADESGLIQVYSKEFGNRLAS*

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