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Report for Sequence Feature Glyma.13g115000

Feature Type:gene_model
Chromosome:Gm13
Start:22869828
stop:22872559
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g115000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20850.1AT RAS associated with diabetes protein 51 JGI N/AIEA
GO:0000724GO-bp double-strand break repair via homologous recombination EnsemblGenomesN/AIEA
GO:0000730GO-bp DNA recombinase assembly EnsemblGenomesN/AIEA
GO:0006259GO-bp DNA metabolic process EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination EnsemblGenomesN/AIEA
GO:0006312GO-bp mitotic recombination EnsemblGenomesN/AIEA
GO:0006974GO-bp cellular response to DNA damage stimulus EnsemblGenomesN/AIEA
GO:0007131GO-bp reciprocal meiotic recombination EnsemblGenomesN/AIEA
GO:0009432GO-bp SOS response JGI N/AIEA
GO:0010212GO-bp response to ionizing radiation EnsemblGenomesN/AIEA
GO:0042148GO-bp strand invasion EnsemblGenomesN/AIEA
GO:0070192GO-bp chromosome organization involved in meiotic cell cycle EnsemblGenomesN/AIEA
GO:1990426GO-bp mitotic recombination-dependent replication fork processing EnsemblGenomesN/AIEA
GO:0000794GO-cc condensed nuclear chromosome EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005654GO-cc nucleoplasm EnsemblGenomesN/AIEA
GO:0000150GO-mf recombinase activity EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000400GO-mf four-way junction DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003690GO-mf double-stranded DNA binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding JGI N/AIEA
GO:0004520GO-mf endodeoxyribonuclease activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008094GO-mf DNA-dependent ATPase activity EnsemblGenomesN/AIEA
KOG1433 KOG DNA repair protein RAD51/RHP55 JGI N/AIEA
PTHR22942Panther RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER JGI N/AIEA
PTHR22942:SF12Panther JGI N/AIEA
PF08423PFAM Rad51 JGI N/AIEA
GN7V-65200SoyCyc9-rxn ATP diphosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g115000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g115000
ParalogEvidenceComments
Glyma.17g045000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g115000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g17530 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g115000
>Glyma.13g115000.1 sequence-type=CDS polypeptide=Glyma.13g115000.1.p locus=Glyma.13g115000 ID=Glyma.13g115000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGCAACCATGGAGCAGCAACGCCACCAAAAAGCGCCCCAACAACAAGACGAAGCCGAAGAGATACAACCTGGCCCTTTACCCGTCGAGCAACTTCAGGCATCGGGCATAGCCGCCACGGACGTTAAGAAGCTTAAAGACGCCGGAATTTGCACCGTTGAATCCGTTGCTTACACTCCTAGGAAAGACCTTTTGCAAATCAAAGGTATCAGTGAAGCTAAAGTTGACAAGATCATTGAAGCAGCTTCTAAGCTGGTGCCTATGGGTTTCACCAGCGCTAGTGAACTTCATGCCCAGCGCGATGCAATCATTCAGATAACCACGGGATCAAGAGAGCTTGACAAGATATTGGAGGGTGGAGTTGAGACCGGTTCTATAACTGAATTATATGGTGAATTTCGGTCTGGGAAGACTCAGTTGTGTCACACTCTCTGTGTCACTTGCCAATTGCCACTAGACCAAGGAGGTGGGGAGGGTAAAGCTATGTACATAGATGCTGAGGGCACATTTAGGCCTCAGCGACTCTTACAGATAGCAGATAGGTTTGGATTGAATGGTGTTGATGTATTGGAAAATGTTGCTTATGCTAGAGCATACAATACTGATCATCAATCACGGCTTCTGCTTGAAGCAGCTTCAATGATGGTGGAAACTAGGTTTGCTGTAATGATAGTAGATAGTGCTACTGCCCTCTATAGGACAGATTTTTCTGGAAGGGGGGAGCTTTCAGCTCGGCAAATGCATCTAGCAAAGTTCCTGAGGAGCCTTCAGAAATTAGCAGATGAGTTTGGTGTGGCTATTGTCATAACAAACCAAGTAGTTTCACAAGTAGATGGTTCTGCAGTCTTTGCTGGACCTCAAATCAAGCCTATTGGAGGCAACATTATGGCTCATGCTACAACAACGAGGCTAGCTCTCAGGAAAGGGAGAGGGGAAGAGCGAATCTGTAAAGTGATAAGTTCTCCTTGCTTGGCGGAAGCCGAAGCAAGGTTTCAGATTTGTGCCGAAGGAGTTTCAGATGTTAAAGACTAA
Predicted protein sequences of Glyma.13g115000
>Glyma.13g115000.1.p sequence-type=predicted peptide transcript=Glyma.13g115000.1 locus=Glyma.13g115000 ID=Glyma.13g115000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSATMEQQRHQKAPQQQDEAEEIQPGPLPVEQLQASGIAATDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIIEAASKLVPMGFTSASELHAQRDAIIQITTGSRELDKILEGGVETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGVDVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQIKPIGGNIMAHATTTRLALRKGRGEERICKVISSPCLAEAEARFQICAEGVSDVKD*






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