Glyma.13g109700

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Report for Sequence Feature Glyma.13g109700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22354330
stop:	22360361
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g109700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G06050.1	AT	oxophytodienoate-reductase 3	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0010181	GO-mf	FMN binding	EnsemblGenomes	N/A	IEA
GO:0010181	GO-mf	FMN binding	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
KOG0134	KOG	NADH:flavin oxidoreductase/12-oxophytodienoate reductase	JGI	N/A	IEA
PTHR22893	Panther	NADH OXIDOREDUCTASE-RELATED	JGI	N/A	IEA
PTHR22893:SF13	Panther		JGI	N/A	IEA
PF00724	PFAM	NADH:flavin oxidoreductase / NADH oxidase family	JGI	N/A	IEA
PWY-735	SoyCyc9	jasmonic acid biosynthesis	Plant Metabolic Network		ISS
GN7V-67762	SoyCyc9-rxn	12-oxophytodienoate reductase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g109700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g109700 not represented in the dataset	Glyma.13g109700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g109700

Paralog	Evidence	Comments
Glyma.17g050000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g109700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g16940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g109700

Limit To All Plant Sequences

>Glyma.13g109700.2 sequence-type=transcript locus=Glyma.13g109700 ID=Glyma.13g109700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGGACTCCCTCTTCTTAAGTTGTTCCTTCACCTTTCTTATATTCAGGAAAGTAAGATCATCTGCATCGCCGACGCTTCCAACAATAACAATGGCCGATAATGCAACAACGCAAGGAAGCAACACCCTATTTTCTCCTTACAAGATGGCCAAATTCAACCTCTCTCATAGGGTGGTGTTGGCTCCTATGACAAGATGCAGAGCGTTGAACTGGATTCCACAGGCAGCGCTTGCTGAATACTACGCTCAAAGATCAACACCAGGTGGATTTCTCATCAGCGAAGGCACCTTGATCTCCCCCACTGCTCCTGGGTTTCCCCATGTTCCCGGGATATATTCAGATGAACAAGTGGAGGCGTGGCGAAACATAGTGGATGCCGTGCATGCCAAAGGCAGCATTATCTTCTGTCAACTTTGGCATGTTGGCCGTGCCTCTCATCCAGTGTATCAACCTGGTGGAGCTCCACCAATTTCGTCCACCAGCAAGCCCATATCGGCGAGGTGGAGGATTCTGCTTCCCGATGGGTCCTATGGTGTGTACCCAGAGCCTCGTGCACTTAGCACTTCTGAGATACCTGAAATAGTGCAGCATTATCGCCAAGCAGCAATTAATGCAATTCGAGCAGGTTTTGATGGAATCGAGATTCATGGGGCACATGGGTATCTCATTGATCAATTCTTAAAGGATGGAATCAATGATCGAACAGATGAATATGGTGGATCACTAGCAAACCGGTGCAGGTTCCTAATGCAGGTGGTTCAAGCAGTTGTTTCTGCTATTGGTGCGGAAAGAGTTGCTGTCAGAATTTCACCAGCAATTGATCACCTTGATGCCATTGATTCTGACCCACTTAAGCTAGGCTTGGCAGTGGTTGAGAGACTCAACAATTTCCAGAAAGAACTGGGCAGAAAACTCACTTATCTTCATGTTACTCAGCCTCGATACACAGCTTATGGCCAAACCGAGTCAGGTAGACCTGGGAGTGAAGAGGAGGAGGCTCATTTGATGCAGAACTTGAGAAAGGCTTATGAGGGAACATTCATGTGTAGTGGTGGCTTTACTAGGAAGTTGGGAATGGAAGCTGTAGCTGAAGGCCATGCTGACTTGGTATCCTATGGTCGACTTTTCATCTCCAATCCAGACTTGGTTTTAAGGCTTAAGCTTAATGCACCTCTTACCAAGTATAACAGGAAGACATTTTACACCCAGGATCCTGTTATAGGATACACAGATTATCCTTTCCTAAGCAAAGAAAGTGAGACAAAGGAGCCAAGGGCACGCCTTTAACTGTAATGTTCTTTGACTTTTTGAATAGTCATATTGTCGTCATATGTATAATTAATTGGAGTATCCCAATCTCAAGTGAATGTCTTCATTATGAAAATCTTATTGCCTGTATAGTCATCTATATTGCCTGCAAGCTGCATCTCTGTATTTATTGTTGAATTACGTTGTATAATAATTTTAATCCAATATCTGTCTGTCCCTTCTTAATATAGGGGACTATGTTTCTTTTTTTCTTTTTTCAGCAAGAGATTAATGATGTAACCAATGAAACCTGGGAAAATTATAATGCTATATAGCTTCTGTCTCAGT

Coding sequences of Glyma.13g109700

Limit To All Plant Sequences

>Glyma.13g109700.1 sequence-type=CDS polypeptide=Glyma.13g109700.1.p locus=Glyma.13g109700 ID=Glyma.13g109700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATAATGCAACAACGCAAGGAAGCAACACCCTATTTTCTCCTTACAAGATGGCCAAATTCAACCTCTCTCATAGGGTGGTGTTGGCTCCTATGACAAGATGCAGAGCGTTGAACTGGATTCCACAGGCAGCGCTTGCTGAATACTACGCTCAAAGATCAACACCAGGTGGATTTCTCATCAGCGAAGGCACCTTGATCTCCCCCACTGCTCCTGGGTTTCCCCATGTTCCCGGGATATATTCAGATGAACAAGTGGAGGCGTGGCGAAACATAGTGGATGCCGTGCATGCCAAAGGCAGCATTATCTTCTGTCAACTTTGGCATGTTGGCCGTGCCTCTCATCCAGTGTATCAACCTGGTGGAGCTCCACCAATTTCGTCCACCAGCAAGCCCATATCGGCGAGGTGGAGGATTCTGCTTCCCGATGGGTCCTATGGTGTGTACCCAGAGCCTCGTGCACTTAGCACTTCTGAGATACCTGAAATAGTGCAGCATTATCGCCAAGCAGCAATTAATGCAATTCGAGCAGGTTTTGATGGAATCGAGATTCATGGGGCACATGGGTATCTCATTGATCAATTCTTAAAGGATGGAATCAATGATCGAACAGATGAATATGGTGGATCACTAGCAAACCGGTGCAGGTTCCTAATGCAGGTGGTTCAAGCAGTTGTTTCTGCTATTGGTGCGGAAAGAGTTGCTGTCAGAATTTCACCAGCAATTGATCACCTTGATGCCATTGATTCTGACCCACTTAAGCTAGGCTTGGCAGTGGTTGAGAGACTCAACAATTTCCAGAAAGAACTGGGCAGAAAACTCACTTATCTTCATGTTACTCAGCCTCGATACACAGCTTATGGCCAAACCGAGTCAGGTAGACCTGGGAGTGAAGAGGAGGAGGCTCATTTGATGCAGAACTTGAGAAAGGCTTATGAGGGAACATTCATGTGTAGTGGTGGCTTTACTAGGAAGTTGGGAATGGAAGCTGTAGCTGAAGGCCATGCTGACTTGGTATCCTATGGTCGACTTTTCATCTCCAATCCAGACTTGGTTTTAAGGCTTAAGCTTAATGCACCTCTTACCAAGTATAACAGGAAGACATTTTACACCCAGGATCCTGTTATAGGATACACAGATTATCCTTTCCTAAGCAAAGAAAGTGAGACAAAGGAGCCAAGGGCACGCCTTTAA

>Glyma.13g109700.2 sequence-type=CDS polypeptide=Glyma.13g109700.2.p locus=Glyma.13g109700 ID=Glyma.13g109700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATAATGCAACAACGCAAGGAAGCAACACCCTATTTTCTCCTTACAAGATGGCCAAATTCAACCTCTCTCATAGGGTGGTGTTGGCTCCTATGACAAGATGCAGAGCGTTGAACTGGATTCCACAGGCAGCGCTTGCTGAATACTACGCTCAAAGATCAACACCAGGTGGATTTCTCATCAGCGAAGGCACCTTGATCTCCCCCACTGCTCCTGGGTTTCCCCATGTTCCCGGGATATATTCAGATGAACAAGTGGAGGCGTGGCGAAACATAGTGGATGCCGTGCATGCCAAAGGCAGCATTATCTTCTGTCAACTTTGGCATGTTGGCCGTGCCTCTCATCCAGTGTATCAACCTGGTGGAGCTCCACCAATTTCGTCCACCAGCAAGCCCATATCGGCGAGGTGGAGGATTCTGCTTCCCGATGGGTCCTATGGTGTGTACCCAGAGCCTCGTGCACTTAGCACTTCTGAGATACCTGAAATAGTGCAGCATTATCGCCAAGCAGCAATTAATGCAATTCGAGCAGGTTTTGATGGAATCGAGATTCATGGGGCACATGGGTATCTCATTGATCAATTCTTAAAGGATGGAATCAATGATCGAACAGATGAATATGGTGGATCACTAGCAAACCGGTGCAGGTTCCTAATGCAGGTGGTTCAAGCAGTTGTTTCTGCTATTGGTGCGGAAAGAGTTGCTGTCAGAATTTCACCAGCAATTGATCACCTTGATGCCATTGATTCTGACCCACTTAAGCTAGGCTTGGCAGTGGTTGAGAGACTCAACAATTTCCAGAAAGAACTGGGCAGAAAACTCACTTATCTTCATGTTACTCAGCCTCGATACACAGCTTATGGCCAAACCGAGTCAGGTAGACCTGGGAGTGAAGAGGAGGAGGCTCATTTGATGCAGAACTTGAGAAAGGCTTATGAGGGAACATTCATGTGTAGTGGTGGCTTTACTAGGAAGTTGGGAATGGAAGCTGTAGCTGAAGGCCATGCTGACTTGGTATCCTATGGTCGACTTTTCATCTCCAATCCAGACTTGGTTTTAAGGCTTAAGCTTAATGCACCTCTTACCAAGTATAACAGGAAGACATTTTACACCCAGGATCCTGTTATAGGATACACAGATTATCCTTTCCTAAGCAAAGAAAGTGAGACAAAGGAGCCAAGGGCACGCCTTTAA

Predicted protein sequences of Glyma.13g109700

Limit To All Plant Sequences

>Glyma.13g109700.1.p sequence-type=predicted peptide transcript=Glyma.13g109700.1 locus=Glyma.13g109700 ID=Glyma.13g109700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNATTQGSNTLFSPYKMAKFNLSHRVVLAPMTRCRALNWIPQAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWRNIVDAVHAKGSIIFCQLWHVGRASHPVYQPGGAPPISSTSKPISARWRILLPDGSYGVYPEPRALSTSEIPEIVQHYRQAAINAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCRFLMQVVQAVVSAIGAERVAVRISPAIDHLDAIDSDPLKLGLAVVERLNNFQKELGRKLTYLHVTQPRYTAYGQTESGRPGSEEEEAHLMQNLRKAYEGTFMCSGGFTRKLGMEAVAEGHADLVSYGRLFISNPDLVLRLKLNAPLTKYNRKTFYTQDPVIGYTDYPFLSKESETKEPRARL*

>Glyma.13g109700.2.p sequence-type=predicted peptide transcript=Glyma.13g109700.2 locus=Glyma.13g109700 ID=Glyma.13g109700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNATTQGSNTLFSPYKMAKFNLSHRVVLAPMTRCRALNWIPQAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWRNIVDAVHAKGSIIFCQLWHVGRASHPVYQPGGAPPISSTSKPISARWRILLPDGSYGVYPEPRALSTSEIPEIVQHYRQAAINAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCRFLMQVVQAVVSAIGAERVAVRISPAIDHLDAIDSDPLKLGLAVVERLNNFQKELGRKLTYLHVTQPRYTAYGQTESGRPGSEEEEAHLMQNLRKAYEGTFMCSGGFTRKLGMEAVAEGHADLVSYGRLFISNPDLVLRLKLNAPLTKYNRKTFYTQDPVIGYTDYPFLSKESETKEPRARL*

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