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Report for Sequence Feature Glyma.13g106900

Feature Type:gene_model
Chromosome:Gm13
Start:22119136
stop:22124250
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g106900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G29810.1AT MAP kinase kinase 2 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0007346GO-bp regulation of mitotic cell cycle EnsemblGenomesN/AIEA
GO:0023014GO-bp signal transduction by protein phosphorylation EnsemblGenomesN/AIEA
GO:0031098GO-bp stress-activated protein kinase signaling cascade EnsemblGenomesN/AIEA
GO:0032147GO-bp activation of protein kinase activity EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0581 KOG Mitogen-activated protein kinase kinase (MAP2K) JGI N/AIEA
PTHR24360Panther MAPKK/MEKK JGI N/AIEA
PTHR24360:SF39Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Expression Patterns of Glyma.13g106900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g106900
ParalogEvidenceComments
Glyma.17g052400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g106900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g16650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g106900
>Glyma.13g106900.1 sequence-type=CDS polypeptide=Glyma.13g106900.1.p locus=Glyma.13g106900 ID=Glyma.13g106900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAAGGAAACTTGGGACTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAATGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACAACCAGTTAACTTTGGCAGACATAGATGTAATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTTCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCGTTGAAGGTAATTCAGATGAATATTGAGGAGTCTATGCGCAAGCAGATTGCACAAGAGCTGAAAATTAATCAACAAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGAAAACGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCTTAGCTGATCTGCTGAAGAAAGTTAAAACAATTCCAGAGGATTATCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTATCTCCACCACGAAAAGCATATTATCCACAGAGACTTAAAACCTTCTAATTTGTTAATAAATCATATTGGTGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGAACCTACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTACTTGAGTGTGCTTTGGGTCGGTTTCCATATGCACCGCCTGATCAAAGTGAAACATGGGAAAGCATTTTTGAGCTTATTGAAACCATTGTCGATAAACCTCCTCCTATCCCTCCTTCTGAACAATTTTCTACAGAATTTTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGGATCGACTGTCAGCTCAGGAATTAATGGCACATCCTTTTGTCAACATGTATGATGACTTGGAGGTGGATCTTTCAGCTTACTTCTCAAATGCAGGATCTCCTCTTGCAACCTTATAA
Predicted protein sequences of Glyma.13g106900
>Glyma.13g106900.1.p sequence-type=predicted peptide transcript=Glyma.13g106900.1 locus=Glyma.13g106900 ID=Glyma.13g106900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKGNLGLGLKLSVPVSDQSNFARFLTESGTFKDGDLLVNRDGVRIVSQNDVEAPPPIKPTDNQLTLADIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLKKVKTIPEDYLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYAPPDQSETWESIFELIETIVDKPPPIPPSEQFSTEFCSFISACLQKDPKDRLSAQELMAHPFVNMYDDLEVDLSAYFSNAGSPLATL*






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