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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19410.1 | AT | U-box domain-containing protein kinase family protein | JGI | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | JGI | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | JGI | N/A | IEA |
| GO:0000151 | GO-cc | ubiquitin ligase complex | JGI | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | JGI | N/A | IEA |
| GO:0004674 | GO-mf | protein serine/threonine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein ligase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | N/A | IEA |
| PTHR24420 | Panther | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE | JGI | N/A | IEA |
| PTHR24420:SF932 | Panther | JGI | N/A | IEA | |
| PF00069 | PFAM | Protein kinase domain | JGI | N/A | IEA |
| PF04564 | PFAM | U-box domain | JGI | N/A | IEA |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | N/A | IEA |
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Glyma.13g106500 not represented in the dataset |
Glyma.13g106500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g052800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g16601 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g106500.1 sequence-type=CDS polypeptide=Glyma.13g106500.1.p locus=Glyma.13g106500 ID=Glyma.13g106500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATCATAAATTTTCTTCTTCCAGGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTGCTCCTGACAGTTGTGTTGTATATATTGTAGCTAGAGATAGAATTATATCCAAGTTGGCTGATTTTTCATCTTCCCGTTCTTGTGTCATGCAAGAAGAAGTGGAACGGCTGCAGCTGGAGTTGCAAAATACTATCACCATGTATAAACAGGTCTGTGGAGAGCTGGTTCAAGCTCAAAACGAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTCAATGCTTCCCTAAAAAGAGAGGAGATTTTGAGAAAGTTGCCTGCTGAAGAGAAAACAAAGTATTTAAAATTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAAAAACAGAGAATTGTGGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGCTAGTAACGAACTTTTTTGCTGAGGACTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACTCACCAGTAGCTGTAAAGGTTCTGCATCAAGACGCAATCAACAAGAAAGATGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTATTGTTATTTGGAGCCTGTCCTGAGAGTGGTTGTCTTGTTTATGAATACAAGGAAAATGGAATTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTCCATCGAGATATAAAACCTGGCAATGTCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATATTGGGCTGGCTAAACTCCTTGTAGAAGTAGTGCCTGACAATGTCACTGAGTACAGAGAATCAATTCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCAGACCAAAATCAGATGTATATGCTTTTGGAGTCATAACTCTCCAATTGATAACTGGTCGCCATGCACGTGGACTCATCGTGACAGTGGAATTGGCTCAAGTAGCCCTTAAATGCTCTGCACTTAGATGCAGAGATAGACCAGAAATTGATACTGAAGTTCTTCCAGTGCTTGAAAGATTTTCTGATGCGGCAAATTCTAGTACAAGGATGGGAATAAATAGTGTAAGTGTGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACATAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGTATTCTGTGCTGACTCCAAACCATACTTTACGTTCAGCCATTCAGGAGTGGAAGTCTGGAGTGACCTTTTGA
>Glyma.13g106500.1.p sequence-type=predicted peptide transcript=Glyma.13g106500.1 locus=Glyma.13g106500 ID=Glyma.13g106500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDHKFSSSRKLKGPGIPTTILRCAPDSCVVYIVARDRIISKLADFSSSRSCVMQEEVERLQLELQNTITMYKQVCGELVQAQNEALLLSSESLEETKIVNASLKREEILRKLPAEEKTKYLKFSKESYERQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDEIKLVTNFFAEDLIIGEGGYGKVYKCNLDHSPVAVKVLHQDAINKKDEFLKEVEILSQLHHPNMVLLFGACPESGCLVYEYKENGIFEMACGLSFLHNSKPEPIVHRDIKPGNVLLDRNYVSKIADIGLAKLLVEVVPDNVTEYRESILAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVELAQVALKCSALRCRDRPEIDTEVLPVLERFSDAANSSTRMGINSVSVPSQYYCPILQEIMDDPYIAADGFTYEYIAIKAWLSKHNVSPMTKLKLQYSVLTPNHTLRSAIQEWKSGVTF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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