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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19560.1 | AT | proteasome family protein | JGI | N/A | IEA |
| GO:0000973 | GO-bp | posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery | EnsemblGenomes | N/A | IEA |
| GO:0006368 | GO-bp | transcription elongation from RNA polymerase II promoter | EnsemblGenomes | N/A | IEA |
| GO:0016973 | GO-bp | poly(A)+ mRNA export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0071033 | GO-bp | nuclear retention of pre-mRNA at the site of transcription | EnsemblGenomes | N/A | IEA |
| GO:0005643 | GO-cc | nuclear pore | EnsemblGenomes | N/A | IEA |
| GO:0035327 | GO-cc | transcriptionally active chromatin | EnsemblGenomes | N/A | IEA |
| GO:0070390 | GO-cc | transcription export complex 2 | EnsemblGenomes | N/A | IEA |
| GO:0003690 | GO-mf | double-stranded DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG2688 | KOG | Transcription-associated recombination protein - Thp1p | JGI | N/A | IEA |
| PTHR12732 | Panther | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING | JGI | N/A | IEA |
| PF01399 | PFAM | PCI domain | JGI | N/A | IEA |
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Glyma.13g103500 not represented in the dataset |
Glyma.13g103500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g055500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g00230 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g103500.1 sequence-type=CDS polypeptide=Glyma.13g103500.1.p locus=Glyma.13g103500 ID=Glyma.13g103500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGCATGGGGGAAGCTCATAGAAGGATCACGGAGTATCTGAATCGCTTTTCCGACGCGATTTCTTCGCAAGACGGAGCTACGTTCAAGTCTCTCTTCGCTCTCTCTTCCAACTCCCCATTCCTTCTCTCTCTGGGCGACGCTCTCAACCTCTTCCAAGACCCCAACAGACTCATCAAGCAATCCGACAACTATTCCCAGTTCGCAGACATCCTCGTCCCTCTCTTCCGATCCCTCCTAAACTACCGCCAGAACAACTTGCTCGAAGCCTATAACGCTTTCGAAAAAACCGCCAATGCGTTTATCCAGGAGTTTCGTAATTGGGAATCCGCTTGGGCTCTGGAGGCTTTGTACGTCATTGTTTACGATATTAGGGTTCTTGCCGAGAAGGCTGATAAAGAATTGGCTTCCAATGGGAAATCCCCTGAGAAGTTGAAAGGCGCTGGCTCCGTCCTTATGAAATTTTTTGGCACCCTTGCGGGAAAAGGCTCTAAGCGTGTTGGAGCATTATATGTAACTTGTCAGTTATTCAAGATTTACTTTAAGCTTGGCACAGTTCACCTTTGCCGCAGTGTAATAAGAAGCATTGAAACTGCACGCATATTTGATTTTGAGGAATTTCCCAAAAGAGACAAGGTCACTTACATGTACTATACTGGTCGTCTTGAAGTTTTCAATGAAAATTTTCCTGCTGCTGATTATAAATTATCGTATGCCCTGAAGCATTGCAATCCTCAAAGTGAAGCCAATATAAGGATGATTCTTAAACATCTAATTCCAGTGAAGCTTTCAATAGGCATATTACCTAAAAACAGTCTCTTGGAGAAGTACAATCTACTTGAGTATAGTAAAATCGTACAAGCTCTTAGAAGGGGCGATCTTCGGCTTCTTCGGTGTGCACTGCAAGATCATGAGGACCGGTTCTTGAGGTCAGGTGTATATCTTGTCTTAGAGAAGTTAGAACTTCAGGTATACCAGAGATTAGTAAAGAAGATTTACATCATTCAAAAGCAGAAGGACCCAGGCAGAGCTCATCAGGTGAAGTTAGAAGTTATTGTTAAAGCATTGAAATGGCTTGAAATTGATATGGACGTGGATGAGGTAGAGTGTATAGTGGCCATACTGATATATAAGAATCTTATGAAAGGTTACTTTGCCCACAAAAGCAAGGTAGTTGTATTGAGCAAGCAAGACCCTTTCCCTAAATTAAATGGAAAACCTGTCAATTCTTAG
>Glyma.13g103500.1.p sequence-type=predicted peptide transcript=Glyma.13g103500.1 locus=Glyma.13g103500 ID=Glyma.13g103500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSMGEAHRRITEYLNRFSDAISSQDGATFKSLFALSSNSPFLLSLGDALNLFQDPNRLIKQSDNYSQFADILVPLFRSLLNYRQNNLLEAYNAFEKTANAFIQEFRNWESAWALEALYVIVYDIRVLAEKADKELASNGKSPEKLKGAGSVLMKFFGTLAGKGSKRVGALYVTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADYKLSYALKHCNPQSEANIRMILKHLIPVKLSIGILPKNSLLEKYNLLEYSKIVQALRRGDLRLLRCALQDHEDRFLRSGVYLVLEKLELQVYQRLVKKIYIIQKQKDPGRAHQVKLEVIVKALKWLEIDMDVDEVECIVAILIYKNLMKGYFAHKSKVVVLSKQDPFPKLNGKPVNS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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