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Report for Sequence Feature Glyma.13g101400

Feature Type:gene_model
Chromosome:Gm13
Start:21659150
stop:21660564
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g101400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52760.1AT lysophospholipase 2 JGI N/AIEA
KOG1455 KOG Lysophospholipase JGI N/AIEA
PTHR11614Panther PHOSPHOLIPASE-RELATED JGI N/AIEA
PTHR11614:SF20Panther ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN JGI N/AIEA
PF12146PFAM Putative lysophospholipase JGI N/AIEA
GN7V-66677SoyCyc9-rxn 2-acylglycerol O-acyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g101400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g101400 not represented in the dataset
Glyma.13g101400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g101400
ParalogEvidenceComments
Glyma.17g058300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g101400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g00450 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g101400
>Glyma.13g101400.1 sequence-type=CDS polypeptide=Glyma.13g101400.1.p locus=Glyma.13g101400 ID=Glyma.13g101400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCGGAATCAGAGGCTCCCCCTAACTTCTGGGGCCACACCCCGGAAGAAGAATACTACACCTCCCAAGGCGTTCGCAACACCAAGTCCCACTTCGAAACCCCCAACGGCAAAATCTTCACCCAGTCCTTCCTCCCTCTCAACCTCCAACCCCACCAAGTCAAAGCCACCGTCTTTATGACCCACGGCTACGGCTCCGACACCGGCTGGCTCTTCCAGAAAATCTGCATCAACTTCGCCACCTGGGGCTACGCCGTCTTCGCCGCCGACCTCCTCGGCCACGGCCGCTCCGACGGTCTCCAGTGCTACCTCGGCGACATGGACAAAATCGCCGCCACCTCCCTCTCCTTCTTCCTCCACGTCCGCAATAGCCACCCCTACAAAAACCTCCCGGCATTCCTCTTCGGCGAGTCCATGGGAGGACTCGCCACGCTCCTCATGTACTTCAAATCGGAACCGGACACGTGGACGGGCCTGATGTTCTCCGCGCCACTCTTCGTGATTCCCGAGGACATGAAACCCAGCAGGGTACATTTGTTCATGTACGGTCTCTTGTTCGGTCTCGCCGACACGTGGGCGGCCATGCCGGATAACAAAATGGTCGGAAAGGCCATCAGGGATCCCGAGAAGTTGAAGGTCATAGCGTCGAACCCGAGGCGCTACACGGGCCCACCCAGGGTGGGGACCATGCGGGAGCTGCTTAGGGTGACACAGTATGTACAGGATAATTTCTCCAAGGTAACGACGCCGTTTTTCACTGCTCACGGAACTTCTGACGGCGTTACCTGCCCTTCCTCGTCCAAGCTGCTGTATGAGAAGGGTTCCAGTGAGGATAAGACGTTGAAGCTCTACGATGGAATGTATCACTCTTTGATTCAGGGAGAGCCCGATGAGTCTGCGAATCTCGTGTTGGGGGACATGAGAGAGTGGATTGATGAGAGGGTTCGACGGTATGGACCTAACAAAAATTCCCAGTGA
Predicted protein sequences of Glyma.13g101400
>Glyma.13g101400.1.p sequence-type=predicted peptide transcript=Glyma.13g101400.1 locus=Glyma.13g101400 ID=Glyma.13g101400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPESEAPPNFWGHTPEEEYYTSQGVRNTKSHFETPNGKIFTQSFLPLNLQPHQVKATVFMTHGYGSDTGWLFQKICINFATWGYAVFAADLLGHGRSDGLQCYLGDMDKIAATSLSFFLHVRNSHPYKNLPAFLFGESMGGLATLLMYFKSEPDTWTGLMFSAPLFVIPEDMKPSRVHLFMYGLLFGLADTWAAMPDNKMVGKAIRDPEKLKVIASNPRRYTGPPRVGTMRELLRVTQYVQDNFSKVTTPFFTAHGTSDGVTCPSSSKLLYEKGSSEDKTLKLYDGMYHSLIQGEPDESANLVLGDMREWIDERVRRYGPNKNSQ*






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