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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57280.1 | AT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0070476 | GO-bp | rRNA (guanine-N7)-methylation | EnsemblGenomes | N/A | IEA |
| GO:0005730 | GO-cc | nucleolus | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | JGI | N/A | IEA |
| GO:0016435 | GO-mf | rRNA (guanine) methyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1541 | KOG | Predicted protein carboxyl methylase | JGI | N/A | IEA |
| PTHR12734 | Panther | METHYLTRANSFERASE-RELATED | JGI | N/A | IEA |
| PF08241 | PFAM | Methyltransferase domain | JGI | N/A | IEA |
| PF12589 | PFAM | Methyltransferase involved in Williams-Beuren syndrome | JGI | N/A | IEA |
| CHLOROPHYLL-SYN | SoyCyc9 | 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | Plant Metabolic Network | ISS | |
| GN7V-66228 | SoyCyc9-rxn | magnesium protoporphyrin IX methyltransferase | Plant Metabolic Network | ISS |
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Glyma.13g099200 not represented in the dataset |
Glyma.13g099200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g060900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g00680 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g099200.1 sequence-type=CDS polypeptide=Glyma.13g099200.1.p locus=Glyma.13g099200 ID=Glyma.13g099200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGTCGAGACCAGAGGTAGTTGCGCCGCCTGAGATTTTCTACGACGATGCCGAAGCTCGCAAGTACACCTCTTCTTCCCGTATTGTTCAAATTCAGGCGACGCTGTCAGAGAGAGCTCTCGAACTACTTGCTTTGCCTGATGACAGCGTTCCTAAATTACTCCTTGATATCGGTTGTGGATCGGGACTTAGCGGTGAGACACTCTCCGAGAATGGACACCATTGGATTGGGCTTGACATTTCAGCATCAATGCTTAATGTTGCGGTGGAGCGAGAGGTTGAGGGTGACCTTTTACTTGGTGACATGGGTCAGGGTCTAGGAATTCGTCCTGGAGTTATTGATGGGGCCATCAGTATATCTGCGGTTCAGTGGTTATGCAATGCTGATAAATCCTCTCACAACCCTCGATTAAGATTGAAGGCCTTTTTTACATCTTTATACAAATGCTTATCAAATGGAGCTAGAGCAGTATTTCAAGTGTATCCTGAAAATATAGACCAACGTGAATTGATTTTAAATGCTGCAATGCATGCTGGATTTGCTGGTGGTATAGTGGTGGATTTTCCACACAGTTCTAAGAAGAGGAAGGAGTTTCTTGTTCTCACTTGTGGTCAACGCTCGGTAAATGTGTCCATTTCCAAAGGTAAAAATGAAGATAGGGAGAGTTGCTCTGATGAGGACAGTGAAGATGAAGAAAAACAGACAGTATGTATATCAGACAGGCATAGACCGCGGAAGAAACAGAAGAATAATAAGAGTGGCAAGGGAAAGGAATGGTTACTAAGGAAGAAAGAGCAGATGAGAAGAAGAGGAAATGTTGTTCCTCCAAATACCAAGTACACGGGTCGGAAACGGAAGGATCGCTTTTGA
>Glyma.13g099200.1.p sequence-type=predicted peptide transcript=Glyma.13g099200.1 locus=Glyma.13g099200 ID=Glyma.13g099200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASRPEVVAPPEIFYDDAEARKYTSSSRIVQIQATLSERALELLALPDDSVPKLLLDIGCGSGLSGETLSENGHHWIGLDISASMLNVAVEREVEGDLLLGDMGQGLGIRPGVIDGAISISAVQWLCNADKSSHNPRLRLKAFFTSLYKCLSNGARAVFQVYPENIDQRELILNAAMHAGFAGGIVVDFPHSSKKRKEFLVLTCGQRSVNVSISKGKNEDRESCSDEDSEDEEKQTVCISDRHRPRKKQKNNKSGKGKEWLLRKKEQMRRRGNVVPPNTKYTGRKRKDRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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