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Report for Sequence Feature Glyma.13g098600

Feature Type:gene_model
Chromosome:Gm13
Start:21372941
stop:21384024
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g098600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30160.1AT villin 4 JGI N/AIEA
GO:0007010GO-bp cytoskeleton organization EnsemblGenomesN/AIEA
GO:0007010GO-bp cytoskeleton organization JGI N/AIEA
GO:0051017GO-bp actin filament bundle assembly EnsemblGenomesN/AIEA
GO:0003779GO-mf actin binding EnsemblGenomesN/AIEA
GO:0003779GO-mf actin binding JGI N/AIEA
GO:0051015GO-mf actin filament binding EnsemblGenomesN/AIEA
KOG0443 KOG Actin regulatory proteins (gelsolin/villin family) JGI N/AIEA
PTHR11977Panther VILLIN JGI N/AIEA
PTHR11977:SF9Panther JGI N/AIEA
PF00626PFAM Gelsolin repeat JGI N/AIEA
PF02209PFAM Villin headpiece domain JGI N/AIEA

Expression Patterns of Glyma.13g098600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g098600 not represented in the dataset
Glyma.13g098600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g098600
ParalogEvidenceComments
Glyma.17g061200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g098600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g00751 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g098600
>Glyma.13g098600.1 sequence-type=CDS polypeptide=Glyma.13g098600.1.p locus=Glyma.13g098600 ID=Glyma.13g098600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGTTTCCATGAGAGATCTGGATCCAGCTTTCAAGGGAGCTGGACAAAAGGCCGGATTGGAAATATGGCGTATCGAGAATTTTAATCCAGTTGCCATCCCTCAGTCATCTTATGGAAAGTTTTTCACTGGGGACTCCTATGTGATCTTGAAGACAACTGCTTCAAAAAGTGGTGCTCTTCGTCATGATATCCATTATTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGCGCTGCAGCCATCAAGACAGTCGAGTTGGATGCAGCTTTAGGAGGACGGGCTGTTCAGTATCGTGAAGTACAAGGTCATGAAACTGAAAAGTTCCTCTCTTATTTCAAACCATGCATCATACCTCAAGAAGGTGGGGCTGCCTCAGGTTTTAAGCATGTTGAGGCTGAAGAACATAAGACACGGTTGTTTGTGTGCAAAGGGAAACATGTGGTACATGTCAAAGAGATTTCTTTCGCTCGATCTTCACTGAACCATGATGATATTTTTATTCTGGATACCGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCAAGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAATATATCAAGGATACCTACCATGATGGGAAATGTGAGATAGCTTCTATTGAGGATGGAAAGTTGATGGCTGATTCTGAGAGTGGAGAATTCTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAGAACAGTCAGTGATGATGACAAGCCTGCTGATTCTCATCCTCCAAAGCTACTTTGTGTTGACAAGGGGAAAGCAGAACCAATTGAATCCGATTCTTTGACAAAGGAATTACTGGACACAAACAAATGTTATATTCTAGATTGTGGGTTGGAAGTTTTTGCATGGATGGGAAGAAACACATCTCTTGATGAAAGAAAAAGTGCAAGTGGAGCAGCAGATGAGTTAATCAGTGGCACTGGTCGACCAAAGTCCCATATAATTCGTGTAATTGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGGCAAGTCATGCAACAATGTCTGAAGAAGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCGTGAAATCTGAGCCCGAAAAAGAAGAACCTCAACCCCACATAGATTGCACAGGACATTTGCAGGTTTGGCGTGTGAATGGTCCGGAAAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTTTATAATGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAGTATCTTATAGGAACATGGGTTGGAAAGAATAGTGTTGAGGAAGAGAGAGCTTCAGCTCTTTCACTAGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTCCTTCCCAGGCTCGTATCTATGAAGGCAGTGAACCAATTCAATTTCATGCCATCCTGCAAAGCTGTATTGTTTTTAAGGGTGGACGTAGTGATGGATACAAGAATTACATTGCGGAGAAGGAAATTCCAGATGAGACATACAATGAGGATGGTGTTGCATTATTCCGCATCCAGGGCACTGGACCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCGCTTATTGCTTCATACTTCATAGCGGGCCCACTGTTTTTATTTGGTCTGGAGGTTTAGCAACTTCAGATGACCAGGAGCTTGTTGAGAGAATGCTGGATTTGATTAAGCCGGATGTACAATGCAAACCACTAAAGGAAGGCCTAGAACCGGAACAGTTTTGGGATTTGTTGGGGGGAAAAACGGAATATCCCAGTCAAAAGATCACGAGGGAAGCTGAAAATGATCCTCATTTATTTTCTTGCAACTTCTCAGAAGGAAATTTAAAGGTGAAAGAGATTCACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTACACCTTGGATTGTCACTCGGAAATCTTTGTTTGGGTTGGCCAGCAGGTTGACTCAAAGAGTAGAATGCAGGCTCTAACAATTGGCGAGAAGTTTCTTGAGCATGATTTTCTCCTAGAAGGATTATCTCGTGAAGCTCCAATATATATTGTCAAAGAAGGTAGTGAGCCACCTTTCTTCACTCGCTTCTTTAAATGGGAGTCTGCAAAATCTGCAATGCTAGGAAACTCATTTCAAAGGAAGCTTGCAATCGTGAAAAATGGGGGTACACCACTTATGGTTAAACACAAACGAAGAGCATCAGTAACTTATGGGGGAAGGTCTAGTGGTGCCCCAGATAAATCCCAGCGTTCCCGTAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCGGCCTTTAATGCACTAGCAGCTAATTTTGAGAGCTCAAATGCAAGGAACCTTTCAACTCCACCTCCGATGATTAGAAAACTTTACCCAAAATCTATGGCACAGGATACAGCAAAATTGGCAACTAAATCTTCAGCCATAGCTCATCTTACTTCTAGTTTTGAACTAACATCAGCACGAGAAAATTTGATTCCTCGGTCACAAAAAGCGAGTTCAGTTACCCCCAAATCAAACCCTGAGACAAGTGATGAGGAGGGTTCTTTGAGCAGCAGGATAGAATCTCTTACCATACAGGAGGATGCGAAAGAGGGTGAAGCTGAAGACGATGAAGGTCTCCCAGTTTACCCGCATGAACGCGTTAACACAGCTTCTACAGATCCTGTAGAAGATATTGACGTGACTAAACGAGAGGCTTATCTGTCATCTGCAGAGTTTCAAGAGAAATTTGGGATGGCGAAGAATGAATTTTACAAGTTGCCAAAATGGAAACAGAACAAACTCAAAATGGCAGTTCAGTTGTTCTGA
Predicted protein sequences of Glyma.13g098600
>Glyma.13g098600.1.p sequence-type=predicted peptide transcript=Glyma.13g098600.1 locus=Glyma.13g098600 ID=Glyma.13g098600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVSMRDLDPAFKGAGQKAGLEIWRIENFNPVAIPQSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCKGKHVVHVKEISFARSSLNHDDIFILDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHDGKCEIASIEDGKLMADSESGEFWGCFGGFAPLPRRTVSDDDKPADSHPPKLLCVDKGKAEPIESDSLTKELLDTNKCYILDCGLEVFAWMGRNTSLDERKSASGAADELISGTGRPKSHIIRVIEGFETVMFKSKFDSWPQASHATMSEEGRGKVAALLKRQGLDVKGLVKSEPEKEEPQPHIDCTGHLQVWRVNGPEKILLPATDQSKFYNGDCYIFQYSYPGEDKEEYLIGTWVGKNSVEEERASALSLASKMVESMKFLPSQARIYEGSEPIQFHAILQSCIVFKGGRSDGYKNYIAEKEIPDETYNEDGVALFRIQGTGPDNMQAIQVEPVASSLNSAYCFILHSGPTVFIWSGGLATSDDQELVERMLDLIKPDVQCKPLKEGLEPEQFWDLLGGKTEYPSQKITREAENDPHLFSCNFSEGNLKVKEIHNFSQDDLMTEDIYTLDCHSEIFVWVGQQVDSKSRMQALTIGEKFLEHDFLLEGLSREAPIYIVKEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAIVKNGGTPLMVKHKRRASVTYGGRSSGAPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFESSNARNLSTPPPMIRKLYPKSMAQDTAKLATKSSAIAHLTSSFELTSARENLIPRSQKASSVTPKSNPETSDEEGSLSSRIESLTIQEDAKEGEAEDDEGLPVYPHERVNTASTDPVEDIDVTKREAYLSSAEFQEKFGMAKNEFYKLPKWKQNKLKMAVQLF*






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