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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G34930.1 | AT | arogenate dehydrogenase | JGI | N/A | IEA |
| GO:0006098 | GO-bp | pentose-phosphate shunt | JGI | N/A | IEA |
| GO:0006571 | GO-bp | tyrosine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006571 | GO-bp | tyrosine biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0004616 | GO-mf | phosphogluconate dehydrogenase (decarboxylating) activity | JGI | N/A | IEA |
| GO:0004665 | GO-mf | prephenate dehydrogenase (NADP+) activity | EnsemblGenomes | N/A | IEA |
| GO:0004665 | GO-mf | prephenate dehydrogenase (NADP+) activity | JGI | N/A | IEA |
| GO:0008977 | GO-mf | prephenate dehydrogenase (NAD+) activity | EnsemblGenomes | N/A | IEA |
| GO:0008977 | GO-mf | prephenate dehydrogenase activity | JGI | N/A | IEA |
| PF02153 | PFAM | Prephenate dehydrogenase | JGI | N/A | IEA |
| PF03807 | PFAM | NADP oxidoreductase coenzyme F420-dependent | JGI | N/A | IEA |
| PWY-3461 | SoyCyc9 | L-tyrosine biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-3481 | SoyCyc9 | superpathway of L-phenylalanine and L-tyrosine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-41946 | SoyCyc9-rxn | arogenate dehydrogenase (NADP+) | Plant Metabolic Network | ISS |
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Glyma.13g095900 not represented in the dataset |
Glyma.13g095900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g01050 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g095900.1 sequence-type=CDS polypeptide=Glyma.13g095900.1.p locus=Glyma.13g095900 ID=Glyma.13g095900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCGGTGTTTCAAGTTTTCGGCCGCCGGCAGTGTATCCCAGTGCCGGCTTGGATACAAGCCATAAGCTCTTTTGAGAGCTTCAGTACAGAAGCTCTCAAAAGAGCTTATGGCTTGTATCCAAACAGGCACGTCCAGAACCAGAAGCTAAAGATTGGCATCACAGGCTTCGGCAAATTTGGGCAGTTCCTGGCCCGAACCTTGGTTCGACAGGGCCACACCGTCTTGGCCCATTCCCGCTCCGACTACACCCACGTCGCACTCGAACTCGGCGTAACGTTCTTCGAAAAACCCCACGACCTCTGCGACGAACGCCCCGAAGTCATTTTGCTCTGTTGCTCCATACTTTCCGCCAGGCACGTGCTCCTCACTCTTCCTCTGCTGCGTTTGGAGCCTGGCACATTGTTCGTCGACGTCCTTTCTGTCAAGGAGTTTCCCAAAAAGCTCTTGCTCGACGTGCTTCCCACCAATCTAAGGGATTGCAATAGTTTGTTTTGGCAACTTGGTCAGTTTCTCGCAAAAACTATTGTGCGTCAAGGTCATCAAGTGTTGGCATACTCTAGGTCAGACTACTCTAGTATAGCTAGGGAATTGGGTGTTACTTATTTCCATGATGCTGATGATCTCTGTGCACAACATCCCGAGGTAATTTTACTTTGCACATCAATCCCTTCCACAGAGGCTGTTCTTAAATCATTCCCCTTGCAGAAATTGGAGAGAAGTACCTTGTTTGTTGATGTACTTTCTGTCAAGGAATTTCATAGAAACTTGTTTCTTCAACATTTGCCACCTGATTTTGATGTGCTTTGTACCCATCCCATGTTTGGGCCACAAAGTGCAAAAGATGGGTGGAGTGGTTTTCTTTTTGTTTTTGATAAGGTTAGAATAGGAACAGATGAAGCAAGAACATCACGATGTGATTGGTGTCTCAACATTTTTTCTAGTGAAGGGTGTCAGCTTGTTGAAACGCCATGTGCTGAACATGATCGACAAGCAGCTGGATCGCAATTTATCACTCCCACTGTAGGAAGAATTTTAGAAAAGCTGGATTTTTTGGAGCCAACGAAAATTGACACAATAGGCTTTGAGTCTTTGTTGAATTTAATGGATAACACTGTTAGAGACAGTTTTGATCTCTACTTTGATTTGTTCTTGTTTAATAAAAACTCCAGGCAACAACTAGAAAGATTCCATCTAGCTTTTGAGTCATTGCAGAATCAGCTTTTTGATCATGTGCTTGATAACTTAAAGCAAGTATTAAAACTTGAAGAAGAATCCCATGATTAG
>Glyma.13g095900.1.p sequence-type=predicted peptide transcript=Glyma.13g095900.1 locus=Glyma.13g095900 ID=Glyma.13g095900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPVFQVFGRRQCIPVPAWIQAISSFESFSTEALKRAYGLYPNRHVQNQKLKIGITGFGKFGQFLARTLVRQGHTVLAHSRSDYTHVALELGVTFFEKPHDLCDERPEVILLCCSILSARHVLLTLPLLRLEPGTLFVDVLSVKEFPKKLLLDVLPTNLRDCNSLFWQLGQFLAKTIVRQGHQVLAYSRSDYSSIARELGVTYFHDADDLCAQHPEVILLCTSIPSTEAVLKSFPLQKLERSTLFVDVLSVKEFHRNLFLQHLPPDFDVLCTHPMFGPQSAKDGWSGFLFVFDKVRIGTDEARTSRCDWCLNIFSSEGCQLVETPCAEHDRQAAGSQFITPTVGRILEKLDFLEPTKIDTIGFESLLNLMDNTVRDSFDLYFDLFLFNKNSRQQLERFHLAFESLQNQLFDHVLDNLKQVLKLEEESHD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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