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Report for Sequence Feature Glyma.13g093800

Feature Type:gene_model
Chromosome:Gm13
Start:20903249
stop:20905141
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g093800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57660.1AT CONSTANS-like 5 JGI N/AIEA
GO:0009416GO-bp response to light stimulus EnsemblGenomesN/AIEA
GO:0009909GO-bp regulation of flower development EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1601 KOG GATA-4/5/6 transcription factors JGI N/AIEA
PF00643PFAM B-box zinc finger JGI N/AIEA
PF06203PFAM CCT motif JGI N/AIEA

Proteins Associated with Glyma.13g093800
LocusGene SymbolProtein Name
COL10 zinc finger protein CONSTANS-LIKE 5-like

Expression Patterns of Glyma.13g093800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g093800
ParalogEvidenceComments
Glyma.17g066600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g093800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g01290 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g093800
>Glyma.13g093800.1 sequence-type=CDS polypeptide=Glyma.13g093800.1.p locus=Glyma.13g093800 ID=Glyma.13g093800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAATTGAAAGAGGAGGCTTGAAGGGATTCAGGAGCGGCTGGAGTGTGCCGCCGAAGAAGCCATGCGACTCCTGTAAGCTGGCTTCGGCGGCGCTTTTCTGCCACCTCGATTCCGCGTTTCTCTGCATCGCGTGCGATTCCAAGATTCACTGCGCGAATAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTTCTGTCACGTGCAAGGCTGACGCGGCCGCCCTTTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTCGCGCAACGCCACGAGCGCGTTCCCGTGGAGCCCTTCTTCGATTCCGCGGAATCCATCGTCAAAGCCTCCGCCACCGCCTCTTTCGGGTTCGTCGTCCCCTCCGACGATGGCGCTGCCTCCGACGTCTTCGCCCCCGACGACTCCGACTCCGCCGCCTGGCTCATCCCGAACCCCAATTTCGGGTCCAAACTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACCACAACAGCGCCGTAAACGACAGTGTCGTTCCAGTTCAAACCAAACCCTCTCTCGCCCCTCCCCCCATCAACAATCACCAGCACCACCACCAATCTGAGACTTGCTTCGACATCGATTTTTGCCGCTCGAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCTTCGTCGTCGCTTGATGTCGGAGTGGTGCCGGACGGGAACACAGTGTCGGACATGTCGTATTCGAGTGGGATTGTGGTGTCGGGTGGACAAGGCGCGACGCAGTTGTGTGGGATGGATCGGGAAGCGAGGGTGCTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTTGAGAAGACGATTCGATACGCATCGCGAAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGGCGCTCATGCTGGACACTCCATACGGTGTCGTACCAACGTTTTAG
Predicted protein sequences of Glyma.13g093800
>Glyma.13g093800.1.p sequence-type=predicted peptide transcript=Glyma.13g093800.1 locus=Glyma.13g093800 ID=Glyma.13g093800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGIERGGLKGFRSGWSVPPKKPCDSCKLASAALFCHLDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASATASFGFVVPSDDGAASDVFAPDDSDSAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNHNSAVNDSVVPVQTKPSLAPPPINNHQHHHQSETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSSGIVVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAAALMLDTPYGVVPTF*






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