Glyma.13g088600

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Report for Sequence Feature Glyma.13g088600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	20290770
stop:	20296155
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g088600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22240.1	AT	pumilio 8	JGI	N/A	IEA
AT1G78160.1	AT	pumilio 7	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	JGI	N/A	IEA
GO:0005488	GO-mf	binding	EnsemblGenomes	N/A	IEA
KOG2049	KOG	Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily)	JGI	N/A	IEA
PTHR12537	Panther	RNA BINDING PROTEIN PUMILIO-RELATED	JGI	N/A	IEA
PTHR12537:SF13	Panther	PROTEIN JSN1-RELATED	JGI	N/A	IEA
PF00806	PFAM	Pumilio-family RNA binding repeat	JGI	N/A	IEA

Expression Patterns of Glyma.13g088600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g088600 not represented in the dataset	Glyma.13g088600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g088600

Paralog	Evidence	Comments
Glyma.14g172400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g088600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g01880	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g088600

Limit To All Plant Sequences

>Glyma.13g088600.2 sequence-type=transcript locus=Glyma.13g088600 ID=Glyma.13g088600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
acaaaacaacaacagaacgtaacaaacaaagcacaaTATCTCTCGAATCGCACAAAAGAGAAAAGAGAGAAGAAGCAGCACCCACCTGTTATGCCCTACTGCTCTCAGAAAAGTGCCCTTTTTGGCTGAAAAAAACGGCTAGTGCAGTTGCAGTGTGGTAGTGGTAGTGCTGATTTTCCCTGAACCGTACCCTACCCTTGTCCCTATCAAATAACCCAAAACCTCTTTCTGTATCCCTGAGTTTCTCGCTCCCACCCTTTCTCCCAAATGTGCAACAAATCCTCACAGAACTGATTCACACTCACCACGCTACTACTCTGTTTTAACCCTAACTGACCAGTACTGCCACCTGTCCACAAAAACACCATCatttcatttcccactcttttctatttctatttcctatgttttcactccaatttattcctattcccctgttttttctcatttTGTCACTCTCCATTCAAAACCCTGTTGCTCATATTTGAATCttctttctcttctttcatctttgtctttctacttcccttctttctttTGGGTTTTTGATCAAAATATCCCAAAAATACGCCATGAGAAACGAAGAGCTAGGAGGAATGTGGTTGAACCGGTTTTCCAATCTTAATACACTCAACAACACCCCCCTTCACCGTGGCCACGTCACCTCACAACCACAATCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATTGTGTTGATGTTGATGTGACGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTAACGAACTAGGGAATGTTGGTGTCAAAGCCAGAGGAAATGGTTATGGATATGGTGCTAATGTTATGGACTCATCATACCCACATGCATTCTCACACTCACTTTGTTCTTTTGATGCACATGTTCATGAAGAAACGGCTACCCCATTACCTATTTGGGGTGTTTCAGTGTCTTCTGATTTGAAGGGACACACTTTTGGACCCCCAATGGAGTTTTCTTCTCATACCCAAAGGAGTAACCCTTGTTATGGACAGGTTCCACTTCAGAACCCTTTTCATGCTACAAGGCCTTTTGCAATGGACTGTGATGTGAAAAGTCCCTTTCTGATGCAACAACAACCCAAGGTTGCTATGAATGTTAACACTCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGGAACGACAAGGGTAGCTGTAAACCCCAATGGTGGTGATTTTTCTCATTCTAGAGAGGACCCTTTGGGGTTTCAATGTGATGGTGGTTTTATCTTGCAAGAGAAGGATGTGAAATGTTGTAATGGTTGTAGAGGCTGCAATTCTTTGTGGGGTTGCAATGAGAGTTTATCCTTACCAGTTCAAGAAGTGGGAGTGGGTGAGGAACTTCCTCAACACATTCCTTCTCGTGTTGCTCCCACTAAGCACGAAAAGAATGGTGTTCTCGCGAGCGACGTTTCACCTTCTTCGCAGCCGTTGTTGTACAATTTTAGTCCTTTGGCTAAGTTCCAAGGCTACATTTATTACCTGGCTAAGGATCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCCGAAGATGTGCTAGTATTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGATTGACCCTTTTGGGAACTACCTCGTGCAAAAGCTGCTTGATGTGTGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTGAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATCTACACGGGACTCGGGTGGTGCAGAAGTTGATCACCACTGTGGACTCTAGAAAACAAATTGCAATGCTGAGGTCTGCCATTCAATCTGGTTTTCTTGCCCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGAAATTTCTAACAGGTAAGTCAATTGTGGAAGGAACAAAATTCACCATCTGTTGAGGGGTACTCTCCTATGACCATAATGGTGAAGATTCTATTCTTGGCCAGTTAGCCTAAATATGTTCCTTATTTTCTTTCCCAGTTAGGAATTCTTAAAAGGCTAATTCTC

Coding sequences of Glyma.13g088600

Limit To All Plant Sequences

>Glyma.13g088600.1 sequence-type=CDS polypeptide=Glyma.13g088600.1.p locus=Glyma.13g088600 ID=Glyma.13g088600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAAACGAAGAGCTAGGAGGAATGTGGTTGAACCGGTTTTCCAATCTTAATACACTCAACAACACCCCCCTTCACCGTGGCCACGTCACCTCACAACCACAATCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATTGTGTTGATGTTGATGTGACGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTAACGAACTAGGGAATGTTGGTGTCAAAGCCAGAGGAAATGGTTATGGATATGGTGCTAATGTTATGGACTCATCATACCCACATGCATTCTCACACTCACTTTGTTCTTTTGATGCACATGTTCATGAAGAAACGGCTACCCCATTACCTATTTGGGGTGTTTCAGTGTCTTCTGATTTGAAGGGACACACTTTTGGACCCCCAATGGAGTTTTCTTCTCATACCCAAAGGAGTAACCCTTGTTATGGACAGGTTCCACTTCAGAACCCTTTTCATGCTACAAGGCCTTTTGCAATGGACTGTGATGTGAAAAGTCCCTTTCTGATGCAACAACAACCCAAGGTTGCTATGAATGTTAACACTCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGGAACGACAAGGGTAGCTGTAAACCCCAATGGTGGTGATTTTTCTCATTCTAGAGAGGACCCTTTGGGGTTTCAATGTGATGGTGGTTTTATCTTGCAAGAGAAGGATGTGAAATGTTGTAATGGTTGTAGAGGCTGCAATTCTTTGTGGGGTTGCAATGAGAGTTTATCCTTACCAGTTCAAGAAGTGGGAGTGGGTGAGGAACTTCCTCAACACATTCCTTCTCGTGTTGCTCCCACTAAGCACGAAAAGAATGGTGTTCTCGCGAGCGACGTTTCACCTTCTTCGCAGCCGTTGTTGTACAATTTTAGTCCTTTGGCTAAGTTCCAAGGCTACATTTATTACCTGGCTAAGGATCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCCGAAGATGTGCTAGTATTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGATTGACCCTTTTGGGAACTACCTCGTGCAAAAGCTGCTTGATGTGTGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTGAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATCTACACGGGACTCGGGTGGTGCAGAAGTTGATCACCACTGTGGACTCTAGAAAACAAATTGCAATGCTGAGGTCTGCCATTCAATCTGGTTTTCTTGCCCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATTTTTTATGCTGCTACAAAGTTTTGTGTGGAAATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTATTCCACCGGAAAATACAAAGATATGCTGGTAAAGGAAATATGCAGACATGGGCATCTCCTTGCTCAAGATCCATTTGGAAATTATGTTGTTCAGTATATTATAGAGATGGAGAACCCAAGTGCCTCATTGAAACTGCATTCTCAGTTCAAAGGGAACTACGCCAACCTCTCAATGCAAAAATTTAGCAGTCATGTAGTTGAAAAATGCCTCGTGCATATTGTAGAGATCAGGTCAAGGATAGTCCAAGAATTGTCGTCTTTTCCTCACCTTGAGCGGTTGCTACAAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTCGGAGTGACCAAGGGCTCTCTGCATGCATCTCTAGCCGAAGCTGTTCGCCCCTACAAAACATTGCGCAGCAGCCCTTATTGCAAAAGGATTTTCTCGAGGAGCCTGCTTAACAAGTGA

>Glyma.13g088600.2 sequence-type=CDS polypeptide=Glyma.13g088600.2.p locus=Glyma.13g088600 ID=Glyma.13g088600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAAACGAAGAGCTAGGAGGAATGTGGTTGAACCGGTTTTCCAATCTTAATACACTCAACAACACCCCCCTTCACCGTGGCCACGTCACCTCACAACCACAATCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATTGTGTTGATGTTGATGTGACGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTAACGAACTAGGGAATGTTGGTGTCAAAGCCAGAGGAAATGGTTATGGATATGGTGCTAATGTTATGGACTCATCATACCCACATGCATTCTCACACTCACTTTGTTCTTTTGATGCACATGTTCATGAAGAAACGGCTACCCCATTACCTATTTGGGGTGTTTCAGTGTCTTCTGATTTGAAGGGACACACTTTTGGACCCCCAATGGAGTTTTCTTCTCATACCCAAAGGAGTAACCCTTGTTATGGACAGGTTCCACTTCAGAACCCTTTTCATGCTACAAGGCCTTTTGCAATGGACTGTGATGTGAAAAGTCCCTTTCTGATGCAACAACAACCCAAGGTTGCTATGAATGTTAACACTCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGGAACGACAAGGGTAGCTGTAAACCCCAATGGTGGTGATTTTTCTCATTCTAGAGAGGACCCTTTGGGGTTTCAATGTGATGGTGGTTTTATCTTGCAAGAGAAGGATGTGAAATGTTGTAATGGTTGTAGAGGCTGCAATTCTTTGTGGGGTTGCAATGAGAGTTTATCCTTACCAGTTCAAGAAGTGGGAGTGGGTGAGGAACTTCCTCAACACATTCCTTCTCGTGTTGCTCCCACTAAGCACGAAAAGAATGGTGTTCTCGCGAGCGACGTTTCACCTTCTTCGCAGCCGTTGTTGTACAATTTTAGTCCTTTGGCTAAGTTCCAAGGCTACATTTATTACCTGGCTAAGGATCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCCGAAGATGTGCTAGTATTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGATTGACCCTTTTGGGAACTACCTCGTGCAAAAGCTGCTTGATGTGTGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTGAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATCTACACGGGACTCGGGTGGTGCAGAAGTTGATCACCACTGTGGACTCTAGAAAACAAATTGCAATGCTGAGGTCTGCCATTCAATCTGGTTTTCTTGCCCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGAAATTTCTAACAGGTAAGTCAATTGTGGAAGGAACAAAATTCACCATCTGTTGA

Predicted protein sequences of Glyma.13g088600

Limit To All Plant Sequences

>Glyma.13g088600.1.p sequence-type=predicted peptide transcript=Glyma.13g088600.1 locus=Glyma.13g088600 ID=Glyma.13g088600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRNEELGGMWLNRFSNLNTLNNTPLHRGHVTSQPQSSSSVFSMIHDDCVDVDVTLSNDFARMSVFNELGNVGVKARGNGYGYGANVMDSSYPHAFSHSLCSFDAHVHEETATPLPIWGVSVSSDLKGHTFGPPMEFSSHTQRSNPCYGQVPLQNPFHATRPFAMDCDVKSPFLMQQQPKVAMNVNTPSSHYFPAAKERGTTRVAVNPNGGDFSHSREDPLGFQCDGGFILQEKDVKCCNGCRGCNSLWGCNESLSLPVQEVGVGEELPQHIPSRVAPTKHEKNGVLASDVSPSSQPLLYNFSPLAKFQGYIYYLAKDQNGCRFLQRMIDEGTSEDVLVLFNGVIDDVVELMIDPFGNYLVQKLLDVCGEDERLQVVSMLTEEPGQLVKTSLNLHGTRVVQKLITTVDSRKQIAMLRSAIQSGFLALIKDLNGNHVIQRCLQYFSCKDNEFIFYAATKFCVEIATHQHGCCVLQRCIDYSTGKYKDMLVKEICRHGHLLAQDPFGNYVVQYIIEMENPSASLKLHSQFKGNYANLSMQKFSSHVVEKCLVHIVEIRSRIVQELSSFPHLERLLQDPYANYVVQRALGVTKGSLHASLAEAVRPYKTLRSSPYCKRIFSRSLLNK*

>Glyma.13g088600.2.p sequence-type=predicted peptide transcript=Glyma.13g088600.2 locus=Glyma.13g088600 ID=Glyma.13g088600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRNEELGGMWLNRFSNLNTLNNTPLHRGHVTSQPQSSSSVFSMIHDDCVDVDVTLSNDFARMSVFNELGNVGVKARGNGYGYGANVMDSSYPHAFSHSLCSFDAHVHEETATPLPIWGVSVSSDLKGHTFGPPMEFSSHTQRSNPCYGQVPLQNPFHATRPFAMDCDVKSPFLMQQQPKVAMNVNTPSSHYFPAAKERGTTRVAVNPNGGDFSHSREDPLGFQCDGGFILQEKDVKCCNGCRGCNSLWGCNESLSLPVQEVGVGEELPQHIPSRVAPTKHEKNGVLASDVSPSSQPLLYNFSPLAKFQGYIYYLAKDQNGCRFLQRMIDEGTSEDVLVLFNGVIDDVVELMIDPFGNYLVQKLLDVCGEDERLQVVSMLTEEPGQLVKTSLNLHGTRVVQKLITTVDSRKQIAMLRSAIQSGFLALIKDLNGNHVIQRCLQYFSCKDNEKFLTGKSIVEGTKFTIC*

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