Glyma.13g088300

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Report for Sequence Feature Glyma.13g088300

Feature Type:	gene_model
Chromosome:	Gm13
Start:	20202192
stop:	20205187
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g088300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10100.1	AT	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	JGI	N/A	IEA
GO:0005992	GO-bp	trehalose biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0005992	GO-bp	trehalose biosynthetic process	JGI	N/A	IEA
GO:0016311	GO-bp	dephosphorylation	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0004805	GO-mf	trehalose-phosphatase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
PTHR10788	Panther	TREHALOSE-6-PHOSPHATE SYNTHASE	JGI	N/A	IEA
PF02358	PFAM	Trehalose-phosphatase	JGI	N/A	IEA
TRESYN-PWY	SoyCyc9	trehalose biosynthesis I	Plant Metabolic Network		ISS
GN7V-67888	SoyCyc9-rxn	trehalose-6-phosphate phosphatase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g088300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g088300 not represented in the dataset	Glyma.13g088300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g088300

Paralog	Evidence	Comments
Glyma.14g171700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g088300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g01910	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g088300

Limit To All Plant Sequences

>Glyma.13g088300.2 sequence-type=transcript locus=Glyma.13g088300 ID=Glyma.13g088300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAACCCTTTTTTCTCCCCTATAAATTCCACGTTGAGCAAAGGAAGCATCCATCCAAATACACCCATAACCATCCCTCTCTGTTCTCTTCTCTGCCTTCTCTGTAATGACGAACCGTAATGTGAATAACACCCTTGTGGAGTTGGCAATGTCGATTTCAAACACAAGTGCTCTACCTAGAGCTACGGTGCCTGGAATAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAAGCTCTTAATGAAAACTTTGGAAGATGGAAGTGTTAATAAAGGAGGGACCAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACCAAGACCCAACAAGTCCTTGGACACTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTGTATGTGAGTCCAAAGGAAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGACCACATTGAAGGACTTAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCCTGGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAGGAAAATGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTGCCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGTGTCATTGGCTGAACAAGTGAGCTTCGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTGGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGGGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGGAGGAGGGGTCATGGGGTTGGGATTCTAGTTTCTAAAATTCCAAAAGAAACTGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAGATTCTTAGATGAATTCAGGGAAATTGACACCAGCCCATAATTTGGTCAAGGGGTGGTTCCAATTATATCCCTTTTCTTGTTCGAAATAGGAAATAGTGTGTTCCATAATTTAAAGTTTTAGGGAGGAACAAAGTTGAAATAGCTAGCTAGGTTCTCTCTCTATTTTCTTTTTCTAATGTAATCTATTCCATCACACGTTTGCATGCGCATGCGGATAGTGAAAGAATTGATGTTTTATGCCGCAATTGCGAGTGGCGCGTCAACCTTCTTGCTCTGAATTGTACTTGTCGTACGTGTGGACAATGTGGTATTGAAAATGAAAATCACCAACAACTTCAACTTCAAAAGGTGATTTAGACCATCACAAGAGTGCAAAACGACTTTGTACCAAAATTAAAAAAAAATGCAAAATGATTCAATTTATAACCTGTT

Coding sequences of Glyma.13g088300

Limit To All Plant Sequences

>Glyma.13g088300.1 sequence-type=CDS polypeptide=Glyma.13g088300.1.p locus=Glyma.13g088300 ID=Glyma.13g088300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGAACCGTAATGTGAATAACACCCTTGTGGAGTTGGCAATGTCGATTTCAAACACAAGTGCTCTACCTAGAGCTACGGTGCCTGGAATAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAAGCTCTTAATGAAAACTTTGGAAGATGGAAGTGTTAATAAAGGAGGGACCAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACCAAGACCCAACAAGTCCTTGGACACTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTGTATGTGAGTCCAAAGGAAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGACCACATTGAAGGACTTAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCCTGGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAGGAAAATGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTGCCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGTGTCATTGGCTGAACAAGTGAGCTTCGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTGGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGGGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGGAGGAGGGGTCATGGGGTTGGGATTCTAGTTTCTAAAATTCCAAAAGAAACTGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAG

>Glyma.13g088300.2 sequence-type=CDS polypeptide=Glyma.13g088300.2.p locus=Glyma.13g088300 ID=Glyma.13g088300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGAACCGTAATGTGAATAACACCCTTGTGGAGTTGGCAATGTCGATTTCAAACACAAGTGCTCTACCTAGAGCTACGGTGCCTGGAATAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAAGCTCTTAATGAAAACTTTGGAAGATGGAAGTGTTAATAAAGGAGGGACCAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACCAAGACCCAACAAGTCCTTGGACACTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTGTATGTGAGTCCAAAGGAAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGACCACATTGAAGGACTTAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCCTGGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAGGAAAATGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTGCCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGTGTCATTGGCTGAACAAGTGAGCTTCGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTGGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGGGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGGAGGAGGGGTCATGGGGTTGGGATTCTAGTTTCTAAAATTCCAAAAGAAACTGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAG

Predicted protein sequences of Glyma.13g088300

Limit To All Plant Sequences

>Glyma.13g088300.1.p sequence-type=predicted peptide transcript=Glyma.13g088300.1 locus=Glyma.13g088300 ID=Glyma.13g088300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNRNVNNTLVELAMSISNTSALPRATVPGIMALLGGVLGLPQKKLLMKTLEDGSVNKGGTKVINTWIDSMRASSPTRVKSTQNQDPTSPWTLYHPSALSMFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRTTLKDLARHFPTAIVSGRCLDKVYNFVRLAELYYAGSHGMDIKGPTNKRSTKKENEQVLFQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWVSLAEQVSFVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRRRGHGVGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSSQYHKL*

>Glyma.13g088300.2.p sequence-type=predicted peptide transcript=Glyma.13g088300.2 locus=Glyma.13g088300 ID=Glyma.13g088300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNRNVNNTLVELAMSISNTSALPRATVPGIMALLGGVLGLPQKKLLMKTLEDGSVNKGGTKVINTWIDSMRASSPTRVKSTQNQDPTSPWTLYHPSALSMFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRTTLKDLARHFPTAIVSGRCLDKVYNFVRLAELYYAGSHGMDIKGPTNKRSTKKENEQVLFQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWVSLAEQVSFVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRRRGHGVGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSSQYHKL*

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