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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G10100.1 | AT | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | JGI | N/A | IEA |
GO:0005992 | GO-bp | trehalose biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0005992 | GO-bp | trehalose biosynthetic process | JGI | N/A | IEA |
GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
GO:0004805 | GO-mf | trehalose-phosphatase activity | EnsemblGenomes | N/A | IEA |
GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
PTHR10788 | Panther | TREHALOSE-6-PHOSPHATE SYNTHASE | JGI | N/A | IEA |
PF02358 | PFAM | Trehalose-phosphatase | JGI | N/A | IEA |
TRESYN-PWY | SoyCyc9 | trehalose biosynthesis I | Plant Metabolic Network | ISS | |
GN7V-67888 | SoyCyc9-rxn | trehalose-6-phosphate phosphatase | Plant Metabolic Network | ISS |
Glyma.13g088300 not represented in the dataset |
Glyma.13g088300 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.14g171700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma13g01910 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g088300.2 sequence-type=transcript locus=Glyma.13g088300 ID=Glyma.13g088300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CAAACCCTTTTTTCTCCCCTATAAATTCCACGTTGAGCAAAGGAAGCATCCATCCAAATACACCCATAACCATCCCTCTCTGTTCTCTTCTCTGCCTTCTCTGTAATGACGAACCGTAATGTGAATAACACCCTTGTGGAGTTGGCAATGTCGATTTCAAACACAAGTGCTCTACCTAGAGCTACGGTGCCTGGAATAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAAGCTCTTAATGAAAACTTTGGAAGATGGAAGTGTTAATAAAGGAGGGACCAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACCAAGACCCAACAAGTCCTTGGACACTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTGTATGTGAGTCCAAAGGAAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGACCACATTGAAGGACTTAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCCTGGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAGGAAAATGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTGCCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGTGTCATTGGCTGAACAAGTGAGCTTCGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTGGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGGGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGGAGGAGGGGTCATGGGGTTGGGATTCTAGTTTCTAAAATTCCAAAAGAAACTGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAGATTCTTAGATGAATTCAGGGAAATTGACACCAGCCCATAATTTGGTCAAGGGGTGGTTCCAATTATATCCCTTTTCTTGTTCGAAATAGGAAATAGTGTGTTCCATAATTTAAAGTTTTAGGGAGGAACAAAGTTGAAATAGCTAGCTAGGTTCTCTCTCTATTTTCTTTTTCTAATGTAATCTATTCCATCACACGTTTGCATGCGCATGCGGATAGTGAAAGAATTGATGTTTTATGCCGCAATTGCGAGTGGCGCGTCAACCTTCTTGCTCTGAATTGTACTTGTCGTACGTGTGGACAATGTGGTATTGAAAATGAAAATCACCAACAACTTCAACTTCAAAAGGTGATTTAGACCATCACAAGAGTGCAAAACGACTTTGTACCAAAATTAAAAAAAAATGCAAAATGATTCAATTTATAACCTGTT
>Glyma.13g088300.1 sequence-type=CDS polypeptide=Glyma.13g088300.1.p locus=Glyma.13g088300 ID=Glyma.13g088300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACGAACCGTAATGTGAATAACACCCTTGTGGAGTTGGCAATGTCGATTTCAAACACAAGTGCTCTACCTAGAGCTACGGTGCCTGGAATAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAAGCTCTTAATGAAAACTTTGGAAGATGGAAGTGTTAATAAAGGAGGGACCAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACCAAGACCCAACAAGTCCTTGGACACTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTGTATGTGAGTCCAAAGGAAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGACCACATTGAAGGACTTAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCCTGGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAGGAAAATGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTGCCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGTGTCATTGGCTGAACAAGTGAGCTTCGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTGGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGGGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGGAGGAGGGGTCATGGGGTTGGGATTCTAGTTTCTAAAATTCCAAAAGAAACTGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAG >Glyma.13g088300.2 sequence-type=CDS polypeptide=Glyma.13g088300.2.p locus=Glyma.13g088300 ID=Glyma.13g088300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACGAACCGTAATGTGAATAACACCCTTGTGGAGTTGGCAATGTCGATTTCAAACACAAGTGCTCTACCTAGAGCTACGGTGCCTGGAATAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAAGCTCTTAATGAAAACTTTGGAAGATGGAAGTGTTAATAAAGGAGGGACCAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACCAAGACCCAACAAGTCCTTGGACACTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTGTATGTGAGTCCAAAGGAAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGACCACATTGAAGGACTTAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCCTGGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAGGAAAATGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTGCCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGTGTCATTGGCTGAACAAGTGAGCTTCGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTGGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGGGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGGAGGAGGGGTCATGGGGTTGGGATTCTAGTTTCTAAAATTCCAAAAGAAACTGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAG
>Glyma.13g088300.1.p sequence-type=predicted peptide transcript=Glyma.13g088300.1 locus=Glyma.13g088300 ID=Glyma.13g088300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTNRNVNNTLVELAMSISNTSALPRATVPGIMALLGGVLGLPQKKLLMKTLEDGSVNKGGTKVINTWIDSMRASSPTRVKSTQNQDPTSPWTLYHPSALSMFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRTTLKDLARHFPTAIVSGRCLDKVYNFVRLAELYYAGSHGMDIKGPTNKRSTKKENEQVLFQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWVSLAEQVSFVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRRRGHGVGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSSQYHKL* >Glyma.13g088300.2.p sequence-type=predicted peptide transcript=Glyma.13g088300.2 locus=Glyma.13g088300 ID=Glyma.13g088300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTNRNVNNTLVELAMSISNTSALPRATVPGIMALLGGVLGLPQKKLLMKTLEDGSVNKGGTKVINTWIDSMRASSPTRVKSTQNQDPTSPWTLYHPSALSMFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRTTLKDLARHFPTAIVSGRCLDKVYNFVRLAELYYAGSHGMDIKGPTNKRSTKKENEQVLFQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWVSLAEQVSFVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRRRGHGVGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSSQYHKL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||