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Report for Sequence Feature Glyma.13g084600

Feature Type:gene_model
Chromosome:Gm13
Start:19574202
stop:19578470
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g084600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77810.2AT Galactosyltransferase family protein JGI N/AIEA
GO:0006486GO-bp protein glycosylation EnsemblGenomesN/AIEA
GO:0006486GO-bp protein glycosylation JGI N/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008378GO-mf galactosyltransferase activity EnsemblGenomesN/AIEA
GO:0008378GO-mf galactosyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
KOG2288 KOG Galactosyltransferases JGI N/AIEA
PTHR11214Panther BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE JGI N/AIEA
PTHR11214:SF5Panther BETA-1,3-GALACTOSYLTRANSFERASE 2-RELATED JGI N/AIEA
PF01762PFAM Galactosyltransferase JGI N/AIEA
GN7V-65395SoyCyc9-rxn galactosylxylosylprotein 3-β-galactosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g084600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g084600 not represented in the dataset
Glyma.13g084600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g084600
ParalogEvidenceComments
Glyma.14g166300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g084600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g02420 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g084600
>Glyma.13g084600.2 sequence-type=transcript locus=Glyma.13g084600 ID=Glyma.13g084600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAATGTTATCCTAGTATAAATATCCACAAAACTACTCTGTTATCATTATTACAACAACATAGAACTGTGTTGTAAGTTGTAATAAATCATAGACAGACACAGAGGACCAATATGAAGATTCGTAGCTCTAAGAAGATCTCAGCAAAATGGGTTCCTGTTTTCTCTGTATTTTCCTTCCTTATTGGAATGCTCATAACAACCAGGATATGGGAACCACCTGAATCTAACGGGGTATTTCTGTCAAATCACCGACATGAGCAAGAACTGCAAGTGGTGTCAGGGGATTGTGCTCCTAAAAAGATCTCTAGACAAGCAAGTTTCCATGCTTCAGATGGAGCTGGCAGCAGCAAGGAGTACTCGAGAACACAAGATTTCGGATGGTTCAGCTAACACCTTGGCCTCGGGGGTCTCCACTGAAGGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGGTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCATCAGATTCATGATTGGTCACAGTGCTACTTCTAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCCCAGCACAAAGACTTCCTTCGCCTGGAACATGTTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAGGGATGTCAAGTATCATGAACCTGAGTTTTGGAAATTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTGGCCACCTACATTTCCATCAACCAGCCAATATTGCACAAATATGCCAATGAAGATGTGTCACTTGGTGCATGGTTCATAGGTCTGGAAGTTGAGCATATAGATGACCGCAGTATGTGCTGTGGGACTCCTCCAGATTGTGAGTGGAAGGCACAAGCAGGTAACATATGTGTTGCATCCTTTGACTGGAGCTGCAGTGGAATCTGCAAGTCAGTAGAGAAGATCAAATATGTGCACTCAAAGTGTGGTGAAGGGGATGGAGCTGTTTGGAGTGCCTTAGTTTAGGTTTGGTTGGTTCAACAGAATGCCAACTAATTCACACGTGTTGGCATGCATACCTCCCTGTCTTTGTTTTTGGGTGTGGGAGGATATGATGATATATTTTTGGTTCAACTATAGTCTATACTTGGTATTATGTAACATAGGCCTCTTTTGTTACATGTATATTTGTATACTTTTGTTCCTTAGACCCTTTTGCACAATGCCTTTGGAGGTAGTTGTGCTAGTGCAGGGTCATTTTTCAGTGTAGCATGCTGAAGAGCAATGAAGTGATAGTGTTGTTGATTCGTTCAGTGATAATATGAATAATAAATTACATAAATCTCTCCAAAGGTTTAAAGAA
Coding sequences of Glyma.13g084600
>Glyma.13g084600.1 sequence-type=CDS polypeptide=Glyma.13g084600.1.p locus=Glyma.13g084600 ID=Glyma.13g084600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATTCGTAGCTCTAAGAAGATCTCAGCAAAATGGGTTCCTGTTTTCTCTGTATTTTCCTTCCTTATTGGAATGCTCATAACAACCAGGATATGGGAACCACCTGAATCTAACGGGGTATTTCTGTCAAATCACCGACATGAGCAAGAACTGCAAGTGGTGTCAGGGGATTGTGCTCCTAAAAAGCCTGTGCAGGATAATGATGTAATGAATAAAGTGTACAAAACCCATGGAGCCATTCAATCTCTAGACAAGCAAGTTTCCATGCTTCAGATGGAGCTGGCAGCAGCAAGGAGTACTCGAGAACACAAGATTTCGGATGGTTCAGCTAACACCTTGGCCTCGGGGGTCTCCACTGAAGGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGGTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCATCAGATTCATGATTGGTCACAGTGCTACTTCTAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCCCAGCACAAAGACTTCCTTCGCCTGGAACATGTTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAGGGATGTCAAGTATCATGAACCTGAGTTTTGGAAATTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTGGCCACCTACATTTCCATCAACCAGCCAATATTGCACAAATATGCCAATGAAGATGTGTCACTTGGTGCATGGTTCATAGGTCTGGAAGTTGAGCATATAGATGACCGCAGTATGTGCTGTGGGACTCCTCCAGATTGTGAGTGGAAGGCACAAGCAGGTAACATATGTGTTGCATCCTTTGACTGGAGCTGCAGTGGAATCTGCAAGTCAGTAGAGAAGATCAAATATGTGCACTCAAAGTGTGGTGAAGGGGATGGAGCTGTTTGGAGTGCCTTAGTTTAG

>Glyma.13g084600.2 sequence-type=CDS polypeptide=Glyma.13g084600.2.p locus=Glyma.13g084600 ID=Glyma.13g084600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAAGAACTGCAAGTGGTGTCAGGGGATTGTGCTCCTAAAAAGATCTCTAGACAAGCAAGTTTCCATGCTTCAGATGGAGCTGGCAGCAGCAAGGAGTACTCGAGAACACAAGATTTCGGATGGTTCAGCTAACACCTTGGCCTCGGGGGTCTCCACTGAAGGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGGTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCATCAGATTCATGATTGGTCACAGTGCTACTTCTAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCCCAGCACAAAGACTTCCTTCGCCTGGAACATGTTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAGGGATGTCAAGTATCATGAACCTGAGTTTTGGAAATTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTGGCCACCTACATTTCCATCAACCAGCCAATATTGCACAAATATGCCAATGAAGATGTGTCACTTGGTGCATGGTTCATAGGTCTGGAAGTTGAGCATATAGATGACCGCAGTATGTGCTGTGGGACTCCTCCAGATTGTGAGTGGAAGGCACAAGCAGGTAACATATGTGTTGCATCCTTTGACTGGAGCTGCAGTGGAATCTGCAAGTCAGTAGAGAAGATCAAATATGTGCACTCAAAGTGTGGTGAAGGGGATGGAGCTGTTTGGAGTGCCTTAGTTTAG
Predicted protein sequences of Glyma.13g084600
>Glyma.13g084600.1.p sequence-type=predicted peptide transcript=Glyma.13g084600.1 locus=Glyma.13g084600 ID=Glyma.13g084600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIRSSKKISAKWVPVFSVFSFLIGMLITTRIWEPPESNGVFLSNHRHEQELQVVSGDCAPKKPVQDNDVMNKVYKTHGAIQSLDKQVSMLQMELAAARSTREHKISDGSANTLASGVSTEGPPRKKVFVVIGINTAFSSRKRRDSVRETWMPQGEQLLQLEREKGIVIRFMIGHSATSNSILDRAIDSEEAQHKDFLRLEHVEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGVLATTLARHRSKPRIYIGCMKSGPVLSRRDVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKYANEDVSLGAWFIGLEVEHIDDRSMCCGTPPDCEWKAQAGNICVASFDWSCSGICKSVEKIKYVHSKCGEGDGAVWSALV*

>Glyma.13g084600.2.p sequence-type=predicted peptide transcript=Glyma.13g084600.2 locus=Glyma.13g084600 ID=Glyma.13g084600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKNCKWCQGIVLLKRSLDKQVSMLQMELAAARSTREHKISDGSANTLASGVSTEGPPRKKVFVVIGINTAFSSRKRRDSVRETWMPQGEQLLQLEREKGIVIRFMIGHSATSNSILDRAIDSEEAQHKDFLRLEHVEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGVLATTLARHRSKPRIYIGCMKSGPVLSRRDVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKYANEDVSLGAWFIGLEVEHIDDRSMCCGTPPDCEWKAQAGNICVASFDWSCSGICKSVEKIKYVHSKCGEGDGAVWSALV*






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