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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77760.1 | AT | nitrate reductase 1 | JGI | N/A | IEA |
| GO:0006809 | GO-bp | nitric oxide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0042128 | GO-bp | nitrate assimilation | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0009703 | GO-mf | nitrate reductase (NADH) activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0030151 | GO-mf | molybdenum ion binding | EnsemblGenomes | N/A | IEA |
| GO:0030151 | GO-mf | molybdenum ion binding | JGI | N/A | IEA |
| GO:0043546 | GO-mf | molybdopterin cofactor binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0050464 | GO-mf | nitrate reductase (NADPH) activity | EnsemblGenomes | N/A | IEA |
| KOG0535 | KOG | Sulfite oxidase, molybdopterin-binding component | JGI | N/A | IEA |
| PTHR19370 | Panther | NADH-CYTOCHROME B5 REDUCTASE | JGI | N/A | IEA |
| PTHR19370:SF5 | Panther | JGI | N/A | IEA | |
| PF00173 | PFAM | Cytochrome b5-like Heme/Steroid binding domain | JGI | N/A | IEA |
| PF00174 | PFAM | Oxidoreductase molybdopterin binding domain | JGI | N/A | IEA |
| PF00175 | PFAM | Oxidoreductase NAD-binding domain | JGI | N/A | IEA |
| PF00970 | PFAM | Oxidoreductase FAD-binding domain | JGI | N/A | IEA |
| PF03404 | PFAM | Mo-co oxidoreductase dimerisation domain | JGI | N/A | IEA |
| PWY-381 | SoyCyc9 | nitrate reduction II (assimilatory) | Plant Metabolic Network | ISS | |
| GN7V-56427 | SoyCyc9-rxn | nitrate reductase (NADH) | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| NR1-2 | nitrate reductase 1 gene 2 |
|
Glyma.13g084000 not represented in the dataset |
Glyma.13g084000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g164900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g02510 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g084000.1 sequence-type=CDS polypeptide=Glyma.13g084000.1.p locus=Glyma.13g084000 ID=Glyma.13g084000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCTTCAGTCGACAACCGTCAATACGGCACCCACATAAACGCCGTCGTTCGCGCTTGCGGCCCAGACTTCAATACCCCTCTCCCGTCGGATTTCGATCTGGACTCATCCAGCGACGACGAAGACCAAAACGACGACGCTTCGTATCTCAAGGAGTTGATACAAAAAGCGAACGCGGAAACCGAGGCGTCGCTGTTGGACCCGCGAGACGAGGGAACCGCGGACCAGTGGATCCCGCGGAACGCCTCCATGGTGCGGCTCACAGGGAAGCACCCCTTCAACGCGGAGGCCCCACTCCCCCGCCTTATGCACCACGGCTTCATCACCCCATCGCCACTCCACTACGTCCGCAACCACGGTCCAGTTCCCAAGATCAAATGGGATGAATGGACCGTGGAAGTGACTGGGTTGGTCAAACGATCAACCCACTTCACCATGGAGAAACTTATGAGGGAATTCCCTCACCGCGAGTTTCCCGCCACACTAGTGTGTGCGGGAAATCGGCGCAAAGAGCATAACATGGTGAAGCAGAGCATCGGCTTCAACTGGGGTGCCGCCGGGGCCTCCACCTCCGTGTGGCGGGGGGTCCCGCTGCGTCATGTGCTCAAACGCTGTGGGATCCTCGCCCGTATGAAGGGCGCCATGTACGTGTCCTTCGAGGGCGCCGAGGATCTCCCCGGGGGTGGTGGGTCCAAGTATGGAACCAGCGTCAAGAGGGAGATGGCCATGGATCCGTCGCGTGACATCATTCTCGCGTTCATGCAAAACGGCGAGCCGTTGGCGCCGGATCATGGATTTCCCGTGCGCATGATTATTCCGGGGTTCATCGGTGGAAGAATGGTGAAATGGCTCAAACGCATTGTCGTTACTGAGCATGAGTGCGATAGTCATTATCATTATAAGGATAATAGAGTACTCCCTTCCCATGTTGATGCAGAACTTGCTAATGACGAAGGTTGGTGGTACAAGCCAGAATACATCATCAACGAGTTGAATATAAACTCAGTGATAACTACGCCTTGTCACGAGGAGATCTTGCCCATCAACTCATGGACTACACAGAGGCCTTACGTAATCAGAGGCTATGCATATTCCGGTGGTGGAAGGAAAGTGACACGTGTGGAGGTAACACTTGATGGTGGAGAAACATGGCACGTGTGCACATTGGACCATACTGAGAAACCTAACAAATATGGCAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTGGAGGTGCTTGACCTACTTGGGGCCAAGGAGATTGCGGTTCGAGCTTGGGATGAAGGTCTCAACACTCAGCCTGAACACCTCATTTGGAATGTTATGGGCATGATGAATAACTGCTGGTTCAGAGTGAAAACAAATGTGTGCAAGCCCCACAAGGGTGAGATTGGCATAGTGTTTGAGCATCCAACCCAACCAGGCAACCAACCCGGTGGCTGGATGGCAAAGGAAAAACATTTGGAAAAATCACAAAAGCCAAAACCAACCCTAAAAAAGAGTGTCTCCACACCATTCATGAACACTTCCTCAAAAATGTTCTCCATCTCCGAAGTGAAAAAACATTCCAACCCTGACTCTGCTTGGATCATTGTCCACGGTCACGTCTATGATTGCACCCGCTTCCTCAAAGATCACCCCGGTGGTACTGACAGCATCCTCATCAATGCTGGCACCGACTGCACCGAAGAGTTTGACGCCATCCATTCTGACAAAGCAAAAAAATTGCTTGAAGATTACCGAATCGGGGAGCTCATCACCACTGGCTACACCTCAGACTCATCGCCCAACAACTCCGTGCATGGCAATTCCGAATTCACTCATTTGGCCCCTATTAAGGAAACTACAACACCACCATCACGTAGTGTGGCTCTCAACCCACGCGAGAAAATCCCATGCAAGCTCGTGTCAAAGACCTCCATTTCTCATGACGCGAGGCTATTCCGTTTTGCATTACCCTCAGAGGACCAACTCTTGGGATTATCCGTGGGGAAACACATTTTCTTGTGTGCCACCATCGACGGCAAGCTATGCATGCGAGCCTACACTCCAACAAGTAGTGTGGATGAAGTGGGTTTCTTTGATCTACTCATCAAGGTGTACTTCAAAGGTGTGCATCCCAAGTTTCCAAATGGAGGACTCATGTCTCAACATTTGGACTCTCTACCCATTGGATCCATGTTGGACGTGAAGGGCCCATTAGGTCACATAGAATACACCGGAAGAGGCAACTTCATGGTTCATGGAAAACCAAGATTCGCCAAGAGGTTGGCCATGTTGGCTGGTGGAACTGGGATCACGCCCATTTACCAAGTGGCGCAAGCGATTTTGAAGGACCCAGAGGACCACACCGAAATGCATGTAGTGTATGCGAATCGCACAGAGGATGATATATTACTGAGGGAGGAGTTGGATGAGTGGGCGAAGATACATAATGACCGGTTCAAGCTATGGTACGTGGTGGAAATCGCAAAGGAAGGGTGGAAATACAGTGTAGGGTTCATCACAGAGAGTATCACGAGGGAGCACCTTCCAAAAGCGTCGAGGGATTCCTTGGCTTTGACATGTGGGCCACCACCCATGATTCAGTTTGCAGTGCAGCCTAATTTGGAGAAAATGGGATATGATATCAAGAACGATTTGCTTGTGTTTTAG
>Glyma.13g084000.1.p sequence-type=predicted peptide transcript=Glyma.13g084000.1 locus=Glyma.13g084000 ID=Glyma.13g084000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASVDNRQYGTHINAVVRACGPDFNTPLPSDFDLDSSSDDEDQNDDASYLKELIQKANAETEASLLDPRDEGTADQWIPRNASMVRLTGKHPFNAEAPLPRLMHHGFITPSPLHYVRNHGPVPKIKWDEWTVEVTGLVKRSTHFTMEKLMREFPHREFPATLVCAGNRRKEHNMVKQSIGFNWGAAGASTSVWRGVPLRHVLKRCGILARMKGAMYVSFEGAEDLPGGGGSKYGTSVKREMAMDPSRDIILAFMQNGEPLAPDHGFPVRMIIPGFIGGRMVKWLKRIVVTEHECDSHYHYKDNRVLPSHVDAELANDEGWWYKPEYIINELNINSVITTPCHEEILPINSWTTQRPYVIRGYAYSGGGRKVTRVEVTLDGGETWHVCTLDHTEKPNKYGKYWCWCFWSLEVEVLDLLGAKEIAVRAWDEGLNTQPEHLIWNVMGMMNNCWFRVKTNVCKPHKGEIGIVFEHPTQPGNQPGGWMAKEKHLEKSQKPKPTLKKSVSTPFMNTSSKMFSISEVKKHSNPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKLLEDYRIGELITTGYTSDSSPNNSVHGNSEFTHLAPIKETTTPPSRSVALNPREKIPCKLVSKTSISHDARLFRFALPSEDQLLGLSVGKHIFLCATIDGKLCMRAYTPTSSVDEVGFFDLLIKVYFKGVHPKFPNGGLMSQHLDSLPIGSMLDVKGPLGHIEYTGRGNFMVHGKPRFAKRLAMLAGGTGITPIYQVAQAILKDPEDHTEMHVVYANRTEDDILLREELDEWAKIHNDRFKLWYVVEIAKEGWKYSVGFITESITREHLPKASRDSLALTCGPPPMIQFAVQPNLEKMGYDIKNDLLVF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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