SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g084000

Feature Type:gene_model
Chromosome:Gm13
Start:19466653
stop:19471575
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g084000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77760.1AT nitrate reductase 1 JGI N/AIEA
GO:0006809GO-bp nitric oxide biosynthetic process EnsemblGenomesN/AIEA
GO:0042128GO-bp nitrate assimilation EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0009703GO-mf nitrate reductase (NADH) activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0030151GO-mf molybdenum ion binding EnsemblGenomesN/AIEA
GO:0030151GO-mf molybdenum ion binding JGI N/AIEA
GO:0043546GO-mf molybdopterin cofactor binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0050464GO-mf nitrate reductase (NADPH) activity EnsemblGenomesN/AIEA
KOG0535 KOG Sulfite oxidase, molybdopterin-binding component JGI N/AIEA
PTHR19370Panther NADH-CYTOCHROME B5 REDUCTASE JGI N/AIEA
PTHR19370:SF5Panther JGI N/AIEA
PF00173PFAM Cytochrome b5-like Heme/Steroid binding domain JGI N/AIEA
PF00174PFAM Oxidoreductase molybdopterin binding domain JGI N/AIEA
PF00175PFAM Oxidoreductase NAD-binding domain JGI N/AIEA
PF00970PFAM Oxidoreductase FAD-binding domain JGI N/AIEA
PF03404PFAM Mo-co oxidoreductase dimerisation domain JGI N/AIEA
PWY-381SoyCyc9 nitrate reduction II (assimilatory) Plant Metabolic Network ISS
GN7V-56427SoyCyc9-rxn nitrate reductase (NADH) Plant Metabolic Network ISS

Proteins Associated with Glyma.13g084000
LocusGene SymbolProtein Name
NR1-2 nitrate reductase 1 gene 2

Expression Patterns of Glyma.13g084000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g084000
ParalogEvidenceComments
Glyma.14g164900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g084000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g02510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g084000
>Glyma.13g084000.1 sequence-type=CDS polypeptide=Glyma.13g084000.1.p locus=Glyma.13g084000 ID=Glyma.13g084000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCTTCAGTCGACAACCGTCAATACGGCACCCACATAAACGCCGTCGTTCGCGCTTGCGGCCCAGACTTCAATACCCCTCTCCCGTCGGATTTCGATCTGGACTCATCCAGCGACGACGAAGACCAAAACGACGACGCTTCGTATCTCAAGGAGTTGATACAAAAAGCGAACGCGGAAACCGAGGCGTCGCTGTTGGACCCGCGAGACGAGGGAACCGCGGACCAGTGGATCCCGCGGAACGCCTCCATGGTGCGGCTCACAGGGAAGCACCCCTTCAACGCGGAGGCCCCACTCCCCCGCCTTATGCACCACGGCTTCATCACCCCATCGCCACTCCACTACGTCCGCAACCACGGTCCAGTTCCCAAGATCAAATGGGATGAATGGACCGTGGAAGTGACTGGGTTGGTCAAACGATCAACCCACTTCACCATGGAGAAACTTATGAGGGAATTCCCTCACCGCGAGTTTCCCGCCACACTAGTGTGTGCGGGAAATCGGCGCAAAGAGCATAACATGGTGAAGCAGAGCATCGGCTTCAACTGGGGTGCCGCCGGGGCCTCCACCTCCGTGTGGCGGGGGGTCCCGCTGCGTCATGTGCTCAAACGCTGTGGGATCCTCGCCCGTATGAAGGGCGCCATGTACGTGTCCTTCGAGGGCGCCGAGGATCTCCCCGGGGGTGGTGGGTCCAAGTATGGAACCAGCGTCAAGAGGGAGATGGCCATGGATCCGTCGCGTGACATCATTCTCGCGTTCATGCAAAACGGCGAGCCGTTGGCGCCGGATCATGGATTTCCCGTGCGCATGATTATTCCGGGGTTCATCGGTGGAAGAATGGTGAAATGGCTCAAACGCATTGTCGTTACTGAGCATGAGTGCGATAGTCATTATCATTATAAGGATAATAGAGTACTCCCTTCCCATGTTGATGCAGAACTTGCTAATGACGAAGGTTGGTGGTACAAGCCAGAATACATCATCAACGAGTTGAATATAAACTCAGTGATAACTACGCCTTGTCACGAGGAGATCTTGCCCATCAACTCATGGACTACACAGAGGCCTTACGTAATCAGAGGCTATGCATATTCCGGTGGTGGAAGGAAAGTGACACGTGTGGAGGTAACACTTGATGGTGGAGAAACATGGCACGTGTGCACATTGGACCATACTGAGAAACCTAACAAATATGGCAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTGGAGGTGCTTGACCTACTTGGGGCCAAGGAGATTGCGGTTCGAGCTTGGGATGAAGGTCTCAACACTCAGCCTGAACACCTCATTTGGAATGTTATGGGCATGATGAATAACTGCTGGTTCAGAGTGAAAACAAATGTGTGCAAGCCCCACAAGGGTGAGATTGGCATAGTGTTTGAGCATCCAACCCAACCAGGCAACCAACCCGGTGGCTGGATGGCAAAGGAAAAACATTTGGAAAAATCACAAAAGCCAAAACCAACCCTAAAAAAGAGTGTCTCCACACCATTCATGAACACTTCCTCAAAAATGTTCTCCATCTCCGAAGTGAAAAAACATTCCAACCCTGACTCTGCTTGGATCATTGTCCACGGTCACGTCTATGATTGCACCCGCTTCCTCAAAGATCACCCCGGTGGTACTGACAGCATCCTCATCAATGCTGGCACCGACTGCACCGAAGAGTTTGACGCCATCCATTCTGACAAAGCAAAAAAATTGCTTGAAGATTACCGAATCGGGGAGCTCATCACCACTGGCTACACCTCAGACTCATCGCCCAACAACTCCGTGCATGGCAATTCCGAATTCACTCATTTGGCCCCTATTAAGGAAACTACAACACCACCATCACGTAGTGTGGCTCTCAACCCACGCGAGAAAATCCCATGCAAGCTCGTGTCAAAGACCTCCATTTCTCATGACGCGAGGCTATTCCGTTTTGCATTACCCTCAGAGGACCAACTCTTGGGATTATCCGTGGGGAAACACATTTTCTTGTGTGCCACCATCGACGGCAAGCTATGCATGCGAGCCTACACTCCAACAAGTAGTGTGGATGAAGTGGGTTTCTTTGATCTACTCATCAAGGTGTACTTCAAAGGTGTGCATCCCAAGTTTCCAAATGGAGGACTCATGTCTCAACATTTGGACTCTCTACCCATTGGATCCATGTTGGACGTGAAGGGCCCATTAGGTCACATAGAATACACCGGAAGAGGCAACTTCATGGTTCATGGAAAACCAAGATTCGCCAAGAGGTTGGCCATGTTGGCTGGTGGAACTGGGATCACGCCCATTTACCAAGTGGCGCAAGCGATTTTGAAGGACCCAGAGGACCACACCGAAATGCATGTAGTGTATGCGAATCGCACAGAGGATGATATATTACTGAGGGAGGAGTTGGATGAGTGGGCGAAGATACATAATGACCGGTTCAAGCTATGGTACGTGGTGGAAATCGCAAAGGAAGGGTGGAAATACAGTGTAGGGTTCATCACAGAGAGTATCACGAGGGAGCACCTTCCAAAAGCGTCGAGGGATTCCTTGGCTTTGACATGTGGGCCACCACCCATGATTCAGTTTGCAGTGCAGCCTAATTTGGAGAAAATGGGATATGATATCAAGAACGATTTGCTTGTGTTTTAG
Predicted protein sequences of Glyma.13g084000
>Glyma.13g084000.1.p sequence-type=predicted peptide transcript=Glyma.13g084000.1 locus=Glyma.13g084000 ID=Glyma.13g084000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASVDNRQYGTHINAVVRACGPDFNTPLPSDFDLDSSSDDEDQNDDASYLKELIQKANAETEASLLDPRDEGTADQWIPRNASMVRLTGKHPFNAEAPLPRLMHHGFITPSPLHYVRNHGPVPKIKWDEWTVEVTGLVKRSTHFTMEKLMREFPHREFPATLVCAGNRRKEHNMVKQSIGFNWGAAGASTSVWRGVPLRHVLKRCGILARMKGAMYVSFEGAEDLPGGGGSKYGTSVKREMAMDPSRDIILAFMQNGEPLAPDHGFPVRMIIPGFIGGRMVKWLKRIVVTEHECDSHYHYKDNRVLPSHVDAELANDEGWWYKPEYIINELNINSVITTPCHEEILPINSWTTQRPYVIRGYAYSGGGRKVTRVEVTLDGGETWHVCTLDHTEKPNKYGKYWCWCFWSLEVEVLDLLGAKEIAVRAWDEGLNTQPEHLIWNVMGMMNNCWFRVKTNVCKPHKGEIGIVFEHPTQPGNQPGGWMAKEKHLEKSQKPKPTLKKSVSTPFMNTSSKMFSISEVKKHSNPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKLLEDYRIGELITTGYTSDSSPNNSVHGNSEFTHLAPIKETTTPPSRSVALNPREKIPCKLVSKTSISHDARLFRFALPSEDQLLGLSVGKHIFLCATIDGKLCMRAYTPTSSVDEVGFFDLLIKVYFKGVHPKFPNGGLMSQHLDSLPIGSMLDVKGPLGHIEYTGRGNFMVHGKPRFAKRLAMLAGGTGITPIYQVAQAILKDPEDHTEMHVVYANRTEDDILLREELDEWAKIHNDRFKLWYVVEIAKEGWKYSVGFITESITREHLPKASRDSLALTCGPPPMIQFAVQPNLEKMGYDIKNDLLVF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo