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Report for Sequence Feature Glyma.13g082300

Feature Type:gene_model
Chromosome:Gm13
Start:19154278
stop:19159357
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g082300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08640.1AT flavonol synthase 1 JGI N/AIEA
GO:0051555GO-bp flavonol biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016706GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors JGI N/AIEA
GO:0045431GO-mf flavonol synthase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI N/AIEA
PTHR10209Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN JGI N/AIEA
PTHR10209:SF55Panther JGI N/AIEA
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI N/AIEA
PWY-3101SoyCyc9 flavonol biosynthesis Plant Metabolic Network ISS
PWY-5391SoyCyc9 syringetin biosynthesis Plant Metabolic Network ISS
PWY-6787SoyCyc9 flavonoid biosynthesis (in equisetum) Plant Metabolic Network ISS
GN7V-45071SoyCyc9-rxn flavonol synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.13g082300
LocusGene SymbolProtein Name
Wm FLS1 Flavonol synthase 1

Expression Patterns of Glyma.13g082300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g082300
ParalogEvidenceComments
Glyma.14g163300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g082300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g02740 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g082300
>Glyma.13g082300.1 sequence-type=CDS polypeptide=Glyma.13g082300.1.p locus=Glyma.13g082300 ID=Glyma.13g082300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGTGCTAAGGGTGCAAACCATAGCTTCCAAATCCAAAGATGCTGCCATCCCAGCCATGTTTGTTAGGGCAGAGACAGAGCAACCAGGCATCACAACCGTTCAAGGGGTGAACCTTGAGGTGCCAATTATTGATTTTAGTGACCCAGATGAAGGGAAAGTGGTGCATGAGATTTTGGAGGCAAGTAGGGACTGGGGCATGTTCCAAATTGTGAACCATGACATACCTAGTGATGTTATAAGAAAGTTGCAAAGTGTTGGGAAAATGTTCTTTGAGTTGCCACAAGAGGAAAAAGAGTTGATTGCTAAGCCTGCTGGGTCTGATTCTATTGAAGGGTATGGCACAAAGCTTCAGAAAGAGGTGAATGGCAAGAAAGGGTGGGTGGATCATTTGTTCCACATTGTGTGGCCTCCTTCCTCCATCAACTACAGTTTCTGGCCCCAAAACCCCCCTTCTTACAGGGAAGTTAATGAGGAATATTGCAAGCACCTAAGAGGAGTGGTAGACAAATTGTTCAAAAGTATGTCGGTAGGGTTGGGGCTTGAAGAGAATGAGCTAAAGGAGGGTGCAAATGAAGATGACATGCATTATCTTTTAAAAATCAATTATTACCCACCTTGTCCATGTCCTGATCTGGTCTTGGGTGTGCCACCACACACAGACATGTCCTACCTCACAATTCTGGTGCCTAACGAGGTGCAGGGCCTTCAAGCATGTAGGGATGGCCATTGGTACGATGTTAAGTATGTCCCCAATGCCCTCGTTATTCACATTGGCGACCAAATGGAGATACTGAGCAATGGAAAATATAAGGCAGTTTTTCACAGAACAACAGTGAACAAAGATGAGACAAGAATGTCGTGGCCCGTGTTCATAGAACCCAAAAAGGAACAAGAAGTTGGTCCTCACCCAAAGTTGGTTAACCAAGACAATCCACCAAAATACAAAACCAAGAAATACAAGGATTATGCTTATTGTAAGCTCAATAAGATCCCTCAATGA
Predicted protein sequences of Glyma.13g082300
>Glyma.13g082300.1.p sequence-type=predicted peptide transcript=Glyma.13g082300.1 locus=Glyma.13g082300 ID=Glyma.13g082300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVLRVQTIASKSKDAAIPAMFVRAETEQPGITTVQGVNLEVPIIDFSDPDEGKVVHEILEASRDWGMFQIVNHDIPSDVIRKLQSVGKMFFELPQEEKELIAKPAGSDSIEGYGTKLQKEVNGKKGWVDHLFHIVWPPSSINYSFWPQNPPSYREVNEEYCKHLRGVVDKLFKSMSVGLGLEENELKEGANEDDMHYLLKINYYPPCPCPDLVLGVPPHTDMSYLTILVPNEVQGLQACRDGHWYDVKYVPNALVIHIGDQMEILSNGKYKAVFHRTTVNKDETRMSWPVFIEPKKEQEVGPHPKLVNQDNPPKYKTKKYKDYAYCKLNKIPQ*






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