Glyma.13g080600

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Report for Sequence Feature Glyma.13g080600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	18725447
stop:	18728755
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g080600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77620.1	AT	P-loop containing nucleoside triphosphate hydrolases superfamily protein	JGI	N/A	IEA
GO:0006281	GO-bp	DNA repair	EnsemblGenomes	N/A	IEA
GO:0007049	GO-bp	cell cycle	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA

Expression Patterns of Glyma.13g080600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g080600 not represented in the dataset	Glyma.13g080600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g080600

Paralog	Evidence	Comments
Glyma.14g148700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Transcripts of Glyma.13g080600

Limit To All Plant Sequences

>Glyma.13g080600.2 sequence-type=transcript locus=Glyma.13g080600 ID=Glyma.13g080600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCACACTCCTGTGACCAGCTTTTTATCAATGCATCAGATTGTTGAAACGGGGCTGCTGTCAAGCAAAATTTTGGATTGACTCTTGAATCAAATCACAGAAAGTTCAAAAGGTCCAGCTTAGCCTAATGGTATAGCAGCTGAGGAGATGGATGATGGGTGATTGAAATGATAACCATTTCCAATGATGAAGCCCGTAGTCATGGTGGAATATCTCCAAGGTTACATGGAAAAAGTAATGTATTTACATGTGGCAGTGTCCAAACTTTAATTCTAGTTGAGGATGTGGACATGCTTTTTCTTGAAGACCGCGGATGTATCGCTGCCATACAACACATTTCTGAGACAGCAAAAGGGCCAATTATATTGACCAGTAATAATAGTTTTGCTAGACTACATGTTTCTTTCTCATTGCCATTGCTAGATGAGTTACTTAGTCATATGTACATGGTTTGTGTCACAGAAGAACTCAACAATAATCCTCTTTTACTGAAAAAATTTATCCAGTCTTGTGATGGAGATATTCGTAAAACCATTATGCAGCTTCAGTTCTGGTTCCAGAGTAAAAAATATAAAATAGACAGGAAAGTGCAGGTGTATGGCTCACTTCCTTTTGATCTTGAGGCTTGTCCTCATATAATACCAAAGATACCCTGGAGTTATCCCTCAGAGTTATCCAAACTAATTGAGAAGAAAATTACTAACTCAATAACCATAATGGAGGAAAACCCATGCTTGCAAGGTTTAGTTAATAAATAG

Coding sequences of Glyma.13g080600

Limit To All Plant Sequences

>Glyma.13g080600.1 sequence-type=CDS polypeptide=Glyma.13g080600.1.p locus=Glyma.13g080600 ID=Glyma.13g080600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAACCATTTCCAATGATGAAGCCCGTAGTCATGGTGGAATATCTCCAAGGTTACATGGAAAAAGTAATGTATTTACATGTGGCAGTGTCCAAACTTTAATTCTAGTTGAGGATGTGGACATGCTTTTTCTTGAAGACCGCGGATGTATCGCTGCCATACAACACATTTCTGAGACAGCAAAAGGGCCAATTATATTGACCAGTAATAATAGTTTTGCTAGACTACATGTTTCTTTCTCATTGCCATTGCTAGATGAGTTACTTAGTCATATGTACATGGTTTGTGTCACAGAAGAACTCAACAATAATCCTCTTTTACTGAAAAAATTTATCCAGTCTTGTGATGGAGATATTCGTAAAACCATTATGCAGCTTCAGTTCTGGTTCCAGAGTAAAAAATATAAAATAGACAGGAAAGTGCAGGTGTATGGCTCACTTCCTTTTGATCTTGAGGCTTGTCCTCATATAATACCAAAGATACCCTGGAGTTATCCCTCAGAGTTATCCAAACTAATTGAGAAGAAAATTACTAACTCAATAACCATAATGGAGGAAAACCCATGCTTGCAAGGTTTAGTTAATAAATAG

>Glyma.13g080600.2 sequence-type=CDS polypeptide=Glyma.13g080600.2.p locus=Glyma.13g080600 ID=Glyma.13g080600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAACCATTTCCAATGATGAAGCCCGTAGTCATGGTGGAATATCTCCAAGGTTACATGGAAAAAGTAATGTATTTACATGTGGCAGTGTCCAAACTTTAATTCTAGTTGAGGATGTGGACATGCTTTTTCTTGAAGACCGCGGATGTATCGCTGCCATACAACACATTTCTGAGACAGCAAAAGGGCCAATTATATTGACCAGTAATAATAGTTTTGCTAGACTACATGTTTCTTTCTCATTGCCATTGCTAGATGAGTTACTTAGTCATATGTACATGGTTTGTGTCACAGAAGAACTCAACAATAATCCTCTTTTACTGAAAAAATTTATCCAGTCTTGTGATGGAGATATTCGTAAAACCATTATGCAGCTTCAGTTCTGGTTCCAGAGTAAAAAATATAAAATAGACAGGAAAGTGCAGGTGTATGGCTCACTTCCTTTTGATCTTGAGGCTTGTCCTCATATAATACCAAAGATACCCTGGAGTTATCCCTCAGAGTTATCCAAACTAATTGAGAAGAAAATTACTAACTCAATAACCATAATGGAGGAAAACCCATGCTTGCAAGGTTTAGTTAATAAATAG

Predicted protein sequences of Glyma.13g080600

Limit To All Plant Sequences

>Glyma.13g080600.1.p sequence-type=predicted peptide transcript=Glyma.13g080600.1 locus=Glyma.13g080600 ID=Glyma.13g080600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MITISNDEARSHGGISPRLHGKSNVFTCGSVQTLILVEDVDMLFLEDRGCIAAIQHISETAKGPIILTSNNSFARLHVSFSLPLLDELLSHMYMVCVTEELNNNPLLLKKFIQSCDGDIRKTIMQLQFWFQSKKYKIDRKVQVYGSLPFDLEACPHIIPKIPWSYPSELSKLIEKKITNSITIMEENPCLQGLVNK*

>Glyma.13g080600.2.p sequence-type=predicted peptide transcript=Glyma.13g080600.2 locus=Glyma.13g080600 ID=Glyma.13g080600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MITISNDEARSHGGISPRLHGKSNVFTCGSVQTLILVEDVDMLFLEDRGCIAAIQHISETAKGPIILTSNNSFARLHVSFSLPLLDELLSHMYMVCVTEELNNNPLLLKKFIQSCDGDIRKTIMQLQFWFQSKKYKIDRKVQVYGSLPFDLEACPHIIPKIPWSYPSELSKLIEKKITNSITIMEENPCLQGLVNK*

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