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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21270.1 | AT | wall-associated kinase 2 | JGI | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0006544 | GO-bp | glycine metabolic process | JGI | N/A | IEA |
| GO:0006563 | GO-bp | L-serine metabolic process | JGI | N/A | IEA |
| GO:0007166 | GO-bp | cell surface receptor signaling pathway | EnsemblGenomes | N/A | IEA |
| GO:0005886 | GO-cc | plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0004372 | GO-mf | glycine hydroxymethyltransferase activity | JGI | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004674 | GO-mf | protein serine/threonine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0005509 | GO-mf | calcium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0030247 | GO-mf | polysaccharide binding | EnsemblGenomes | N/A | IEA |
| GO:0030247 | GO-mf | polysaccharide binding | JGI | N/A | IEA |
| PTHR11680 | Panther | SERINE HYDROXYMETHYLTRANSFERASE | JGI | N/A | IEA |
| PF00464 | PFAM | Serine hydroxymethyltransferase | JGI | N/A | IEA |
| GLYSYN2-PWY | SoyCyc9 | glycine biosynthesis | Plant Metabolic Network | ISS | |
| PWY-181 | SoyCyc9 | photorespiration | Plant Metabolic Network | ISS | |
| PWY-2161 | SoyCyc9 | folate polyglutamylation | Plant Metabolic Network | ISS | |
| PWY-3841 | SoyCyc9 | folate transformations II | Plant Metabolic Network | ISS | |
| GN7V-66551 | SoyCyc9-rxn | glycine hydroxymethyltransferase | Plant Metabolic Network | ISS |
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Glyma.13g077700 not represented in the dataset |
Glyma.13g077700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g151900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.13g077700.1 sequence-type=CDS polypeptide=Glyma.13g077700.1.p locus=Glyma.13g077700 ID=Glyma.13g077700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGGCGGCTTATGTATAAAGTTGTCGTAGCTTGGAAATTTTACTTAGCGTTATTTGTTACGTTAATTCTTCCGCCATGCATTGCGAAAGTGGACATATTATATTATAGTTACTATTGTCTGATAATTTTATTGGAAAAATGTATTGAAGTGGGGCTTCCAACACTGATTGTTATGGTTTTCATCTCGTTTGTTCATGCAATTATTGACAAGGAAAAGGATCGGCAATTTAAAAGTCTTGAGCTTATTGCTTTTGAGAATTTTACATATATGAAAGGAGTTGGTTCATGCCCCACAAACAAGTACTCAGAAGGATTACTAGTGTTAGCGCTTGCATTATTGGTAGTACATGTAAGAGCAATTACCACACGTGATATTGCCCTGCATGGCTACATGGACACGTGCAGGAATGTTTCAATTCCATATCCATTCGGCATAGGCACTTCTAAAGAAACAGGTGAGAACTGTTTCTTGGAAGAAAACTTGAATCTAACATGCCCAAACAACAATTTATATTCAAGGTTTAATTTGCAAGTTTTAGACATAACCCTAAAAGGCCATTTTATGGACAGTTGTTTTATGTCTCCATACTTTGCAATAACACCCTCCAACGGAGTGGCCAATGACCCTTTTCTTAGAACTGCTAGCAATTTCACCATTTCCAGCAAAGAAAACAAGTTCATAAGTGTTGGTTGCGAGACTTATGGCTTCCTCAATATAGCTTCTACAATGGCATGCTCCAAGTTCCCTGATGATGTAGCAACCAATGGGGATTATTCAGGGATAGGGTGTTGTGAAGTGGATATTCCTCCCAACATGAAGAACATCAGCATAGAAGCATATAGATTCGATTTGTCTTCCAATTACTTCCAAACTTGTGGTCATTCCTTTGTTCCCAAACGTGGCTCCTACAACTTTGATATAAGTCATTTGGAGAAGCCGTTTAACACCATCCCTATGGTTGTTGATTGGAGTGTTAGAGATGACCTGGGATGTGAGGCTTTTAGGAAACGGTTTCGAAAAAGTGCATGCATGGACAATAGCTATTGTCATGACATTGAGATTAGTTATGGATACCAATGCAGATGTTAA
>Glyma.13g077700.1.p sequence-type=predicted peptide transcript=Glyma.13g077700.1 locus=Glyma.13g077700 ID=Glyma.13g077700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGRLMYKVVVAWKFYLALFVTLILPPCIAKVDILYYSYYCLIILLEKCIEVGLPTLIVMVFISFVHAIIDKEKDRQFKSLELIAFENFTYMKGVGSCPTNKYSEGLLVLALALLVVHVRAITTRDIALHGYMDTCRNVSIPYPFGIGTSKETGENCFLEENLNLTCPNNNLYSRFNLQVLDITLKGHFMDSCFMSPYFAITPSNGVANDPFLRTASNFTISSKENKFISVGCETYGFLNIASTMACSKFPDDVATNGDYSGIGCCEVDIPPNMKNISIEAYRFDLSSNYFQTCGHSFVPKRGSYNFDISHLEKPFNTIPMVVDWSVRDDLGCEAFRKRFRKSACMDNSYCHDIEISYGYQCRC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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