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Report for Sequence Feature Glyma.13g076300

Feature Type:gene_model
Chromosome:Gm13
Start:18034744
stop:18039221
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g076300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07360.1AT CCCH-type zinc fingerfamily protein with RNA-binding domain JGI N/AIEA
GO:0000387GO-bp spliceosomal snRNP assembly EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0000974GO-cc Prp19 complex EnsemblGenomesN/AIEA
GO:0071006GO-cc U2-type catalytic step 1 spliceosome EnsemblGenomesN/AIEA
GO:0071007GO-cc U2-type catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0017070GO-mf U6 snRNA binding EnsemblGenomesN/AIEA
GO:0036002GO-mf pre-mRNA binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0153 KOG Predicted RNA-binding protein (RRM superfamily) JGI N/AIEA
PTHR14089Panther CELL CYCLE CONTROL PROTEIN JGI N/AIEA
PTHR14089:SF6Panther PRE-MRNA-SPLICING FACTOR RBM22 JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Expression Patterns of Glyma.13g076300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g076300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g03760 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g076300
>Glyma.13g076300.1 sequence-type=CDS polypeptide=Glyma.13g076300.1.p locus=Glyma.13g076300 ID=Glyma.13g076300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCATAGGTTGCTGAGAGACCACGAGGCCGACGGCTGGGAGCGCTCAGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAAAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGAGACTCGGCTCTTAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCCTGAAGCTTCAAAGGACAACTCCATATTACAAAAGAAATCGAGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGTCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAACGAAACCCGAGTCTGACGGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGAAGCAAAGCCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCTACCACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCGAAGAATGGGAGCTCTTGTTTCATCCCAAGATGCTCCTGGTGGGCCTTCTGGGTCAGAGGAGAACAACCCCGGTTTGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCCACCTGGTCAATATCATCAGTATTATCCACCATATGGTTATATGCCACCACCTCCGCCTTATCATCAATACCCACAACCTCCATACAATGCTGCAGCGGCTCCATCCCAGCCACCTGCTGCGGCTCCATCCCAGCCACCAGCTGCAAATCATCCTTATCCACATTCTATGCAGCCAGGTTCTTCATAA
Predicted protein sequences of Glyma.13g076300
>Glyma.13g076300.1.p sequence-type=predicted peptide transcript=Glyma.13g076300.1 locus=Glyma.13g076300 ID=Glyma.13g076300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDSALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTTKPESDGSDQARQQASVAHSGLLPRAVISQKQSQDQTQGMLYYNNLPPPQQERSYYPSMDPRRMGALVSSQDAPGGPSGSEENNPGLEKQQMQHYAHPMMPPPPGQYHQYYPPYGYMPPPPPYHQYPQPPYNAAAAPSQPPAAAPSQPPAANHPYPHSMQPGSS*






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