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Report for Sequence Feature Glyma.13g075600

Feature Type:gene_model
Chromosome:Gm13
Start:17899328
stop:17902677
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g075600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62730.1AT Terpenoid synthases superfamily protein JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0032981GO-bp mitochondrial respiratory chain complex I assembly EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity JGI N/AIEA
KOG4411 KOG Phytoene/squalene synthetase JGI N/AIEA
PTHR21181Panther FAMILY NOT NAMED JGI N/AIEA
PTHR21181:SF4Panther JGI N/AIEA
PF00494PFAM Squalene/phytoene synthase JGI N/AIEA

Expression Patterns of Glyma.13g075600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g075600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g03820 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g075600
>Glyma.13g075600.1 sequence-type=CDS polypeptide=Glyma.13g075600.1.p locus=Glyma.13g075600 ID=Glyma.13g075600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGGCGGTTCTGCATCTAGTAACTTAAGGGCAGCTCTCTCCCATTGCGTACAACAAGTGCGAAGTTATGATTATCATCACTATCTTTGCCTTCTCGAGCTGCCTCCGTCTATGCGGAAGGCTGCATTTGCACTCCGTGCCTTGAATGTTGAAACAGCGAGGGCTATGGATGTTGCCTCAGATCCCAGGATCGGCCTTATGCGCCTTGTTTGGTGGCAGGAAGCCATAGACAAAATGTTCGCCAATAAACTGATTGAACACCCAACAGCACAGGCCCTGTCATCTGTGATAGCTGAGACCAAACTCAGCAAGATATGGTTGAAACGATCTGTTGATGCTCGGATCAATGATGCAAGAAGAGAGGTTACTGACATGCCCAAAACTATTGGAGAGTTGGAGAAATATGCCGAGGACACTGTATCAACTATGCTGTACCTAACACTTCAAGCTGGTGGTATCAAGTCTACCGCAGCTGACCATGCAGCCTCACATATTGGCAAGGCTAGTGGCATTCTCTTGCTCCTTAAATCATTGCCCTATCATGCGTCTCACAACCGGCATTTTTCTTACATACCAACTGCAATAGCATCCAAGCATGGGCTAATAGTTAAGCAGGGAGGTGGAGAAGAGAGATGGGTGGATTCTCGCGAAGGCCTTTGTGAAGCAGTTTATGAAATGGCATCAGTAGCCAATGCACACTTAGAGAAGGCCCGGAAGTTAACCGAAAGTGTACCTCCTGAGGCTCTTCCAGTGCTCCTTCCAGCAGTGCCTGCTCAGGTTCTCTTGGATTCCCTAAGAAAGGTCCAATTTGATGTGTTTGACTCAAAGCTAACAAGAGGGGTGCTGGGAATACCTCCTTTGTGGTACCAGCTTAAGCTCAAGTGGACGTCATGGAGAAGGAAATACTAA
Predicted protein sequences of Glyma.13g075600
>Glyma.13g075600.1.p sequence-type=predicted peptide transcript=Glyma.13g075600.1 locus=Glyma.13g075600 ID=Glyma.13g075600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNGGSASSNLRAALSHCVQQVRSYDYHHYLCLLELPPSMRKAAFALRALNVETARAMDVASDPRIGLMRLVWWQEAIDKMFANKLIEHPTAQALSSVIAETKLSKIWLKRSVDARINDARREVTDMPKTIGELEKYAEDTVSTMLYLTLQAGGIKSTAADHAASHIGKASGILLLLKSLPYHASHNRHFSYIPTAIASKHGLIVKQGGGEERWVDSREGLCEAVYEMASVANAHLEKARKLTESVPPEALPVLLPAVPAQVLLDSLRKVQFDVFDSKLTRGVLGIPPLWYQLKLKWTSWRRKY*






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