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Report for Sequence Feature Glyma.13g074700

Feature Type:gene_model
Chromosome:Gm13
Start:17721685
stop:17729903
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g074700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53530.1AT vacuolar protein sorting 26A JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0007034GO-bp vacuolar transport JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0042147GO-bp retrograde transport, endosome to Golgi EnsemblGenomesN/AIEA
GO:0005768GO-cc endosome EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0030904GO-cc retromer complex EnsemblGenomesN/AIEA
GO:0030904GO-cc retromer complex JGI N/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
KOG3063 KOG Membrane coat complex Retromer, subunit VPS26 JGI N/AIEA
PTHR12233Panther VACUOLAR PROTEIN SORTING 26 RELATED JGI N/AIEA
PF03643PFAM Vacuolar protein sorting-associated protein 26 JGI N/AIEA

Expression Patterns of Glyma.13g074700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g074700 not represented in the dataset
Glyma.13g074700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g074700
ParalogEvidenceComments
Glyma.20g048500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g074700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g03920 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g074700
>Glyma.13g074700.2 sequence-type=transcript locus=Glyma.13g074700 ID=Glyma.13g074700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACGTTCCTAACCTTCATCACACTGTGGACTGTTTGTTCTGTTGCATTTGCATGTGGTGCCATTTTCCATTTCCAGAACCTTTTTTTTTCCTGAATTGTTTTCCTTTTCTATCATTTTCTCTTTCTCTCGATCATCACTCTCTCTGAAAAATCATGGTGGGTTTCTCTTTCTGAAGGAATATAATTGCGGGAGCTTTCAAGCCCCCATGCAAGATCTCAATCTGTCTTGCTGATGGAAGTACTCCCAAGCAGGTTCGCATAAAGAAGGAAAATGGCCAAATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGATTCTTATGCCACCGGATTATTAGGATTTCTTCTGTTTTTGTCACCACTTGTTCTGAGTGGAAAGTTTTCTAATAATTTTACTGTAGTTACTAGAAAGTGGGTAATAGGGGTATTATTCTATTCTATTTAAAAAACTTCCTTCACGGGTATGGAACAAACTATTTCCTAATTTTTAACATTTTAACATCCAACTTGACTTATTTTACACTACAAATGAATTCCATAATACATACCGTACAAGTTGAGTTAATGGTAGTTTATATAGGAGACAATTAATTCAATTTTCATTGTAAAGCAATTTCAA
Coding sequences of Glyma.13g074700
>Glyma.13g074700.1 sequence-type=CDS polypeptide=Glyma.13g074700.1.p locus=Glyma.13g074700 ID=Glyma.13g074700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATATAATTGCGGGAGCTTTCAAGCCCCCATGCAAGATCTCAATCTGTCTTGCTGATGGAAGTACTCCCAAGCAGGTTCGCATAAAGAAGGAAAATGGCCAAATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGA

>Glyma.13g074700.2 sequence-type=CDS polypeptide=Glyma.13g074700.2.p locus=Glyma.13g074700 ID=Glyma.13g074700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGA
Predicted protein sequences of Glyma.13g074700
>Glyma.13g074700.1.p sequence-type=predicted peptide transcript=Glyma.13g074700.1 locus=Glyma.13g074700 ID=Glyma.13g074700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNIIAGAFKPPCKISICLADGSTPKQVRIKKENGQMVMVPLFQSQENIVGEVIIEPSNGKKVEHNGVKIELLGQIELYFDRGNFYDFSSLVRELDVPGNLYERKTYPFEFSTVEMPYESYNGINVRLRYILKVTISRNYVNNIVEYMDFVVRNYAPAPPINNSIKMEVGIEECLHIEFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELEVRRRESTGSGTNTYVETETLSKFELMDGVPVRGESIPVRLFLSPYELTPTYHNINNKFSVKYFLNLVLVDEEDRRYFKQQEITVYRLSENS*

>Glyma.13g074700.2.p sequence-type=predicted peptide transcript=Glyma.13g074700.2 locus=Glyma.13g074700 ID=Glyma.13g074700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVMVPLFQSQENIVGEVIIEPSNGKKVEHNGVKIELLGQIELYFDRGNFYDFSSLVRELDVPGNLYERKTYPFEFSTVEMPYESYNGINVRLRYILKVTISRNYVNNIVEYMDFVVRNYAPAPPINNSIKMEVGIEECLHIEFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELEVRRRESTGSGTNTYVETETLSKFELMDGVPVRGESIPVRLFLSPYELTPTYHNINNKFSVKYFLNLVLVDEEDRRYFKQQEITVYRLSENS*






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