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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79690.1 | AT | nudix hydrolase homolog 3 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0008239 | GO-mf | dipeptidyl-peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| PTHR23422 | Panther | DIPEPTIDYL PEPTIDASE III-RELATED | JGI | N/A | IEA |
| PTHR23422:SF4 | Panther | JGI | N/A | IEA | |
| PF00293 | PFAM | NUDIX domain | JGI | N/A | IEA |
| PF03571 | PFAM | Peptidase family M49 | JGI | N/A | IEA |
| NONMEVIPP-PWY | SoyCyc9 | methylerythritol phosphate pathway I | Plant Metabolic Network | ISS | |
| PWY-5121 | SoyCyc9 | superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | Plant Metabolic Network | ISS | |
| PWY-5123 | SoyCyc9 | trans, trans-farnesyl diphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5910 | SoyCyc9 | superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | Plant Metabolic Network | ISS | |
| PWY-7560 | SoyCyc9 | methylerythritol phosphate pathway II | Plant Metabolic Network | ISS | |
| PWY-922 | SoyCyc9 | mevalonate pathway I | Plant Metabolic Network | ISS | |
| GN7V-65186 | SoyCyc9-rxn | isopentenyl-diphosphate Δ-isomerase | Plant Metabolic Network | ISS |
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Glyma.13g072500 not represented in the dataset |
Glyma.13g072500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g04150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g072500.1 sequence-type=CDS polypeptide=Glyma.13g072500.1.p locus=Glyma.13g072500 ID=Glyma.13g072500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAGCAAGCAGAAGAGCACCTCGACGTTCTCACCAAAACCGGCCTCAAAACCGGCGTGTCCAAGCCCAGGGGAGACGTGCATCGCGATGGCGACTACCACCGCGCCGTCCACGTTTGGATATTCGCGGAGAGCACGCGGGAACTTCTCCTCCAACGGCGCGCCTCGTGCAAGGACTCGTGGCCCGATCTCTGGGATATTTCTAGTGCCGGCCACATTTCCGCTGGTGATTCGTCCCTCACCTCTGCTAGGAGGGAGCTTGAAGAAGAGTTGGGTATAACCCTTCCTAAGGATGCATTTGAATTGATATTTGTTTTCCTCCAAGAGTGTGTCATAAATGATGGAAAATACATAAATAATGAATATAATGATGTGTATCTGGTAACAACACTTGATCCAATACCTCTGGAAGCCTTTGTACTTCAGGAAACTGAGGTTTCTGCTGTTAAATATATCTCTTATGAAGAGTATAAAAGGTTACTGGCCAAAGAAGATTCAGGCTATGTCCCTTATGATGTTAATGGACAATATGGTCAACTCTTTGATATAATTGAAAAGAGGTACAAGGAAAATACTGTAGCCCGCAGTTTGACTCTACAGAAGCAAATAAGTCGTTATGCTCCTATTTCCCTCAGTGCTGAGTTGACAGGGCTTACAGATTCAGACAAAGAGGCTCTAGTTTTTGTTGTCAAGGCTGCAAATGTTATGGATGAAATTTTTTATCTGCAGGCATGGTACAGTAATCCATCTCTTAGAGATTGGTTGAAGGAGCATGCTGATACATCAGAGTTTAATAAGTTGAAATGGTCATATTATCAGATTAACAAGAGCCCGTGGTCTAGCCTTGATGAAGACGAGGCATTTTTGTCGACTGCAGATTCAGCAATAAGGTTGCTTTCTAAAGCAACTAGGATAGTGAAAGATTGGAAGGGTTTGGAATACAGAGCAGCATTTCCCTTGCTTAAACCTGCTGGCGCTAATTTCTACCCTCCAGACATGGACAAAATGGAGTTTGAATTATGGAAGGACAGTCTAGAAAAGCATGAACAGAAGGAAGCAACAGGCTTTTTCAGTGTTATTAAAAGGCACAGTGAATTTATTTTAGATTCTCATCTGTCTGATAACAAAACAGGTTCTCATGATCTCTATATAGTTCCTTACTCCGAAGAGTACAAGTCTCTTCTTGCAAAAGCCTCTGATTTATTGCATAAAGCTGGAGACATTAGCGACTCACCGGGTTTGAAGAGGCTGCTACATAGCAAGGCTGATGCTTTCCTTTCAAATGATTATTATGACTCAGATATAGCCTGGATGGAATTGGACTCTAAGTTAGATGTCACTATTGGTCCGTATGAAACTTATGAGGATAAACTTTTTGGATATAAGGCTACCTTTGAAGCATATATTGGAATCAGAGATGACGAAGCAACAGCTCAATTGAAACTCTTTGGTGATAATCTGCTGCTTCTGGAGCAAAATCTCCCAATGGACAGTGCATACAAATCAGAAGATGTGAATGCAGCACCTATCCGTGTTATTCAGCTTCTATATAATGCAGGGGATGTCAAGGGACCACAAACTCTTGCTTTCAATCTTCCAAATGATGAGCGTATTGTAAAAGACCGGGGATCATCAATGGTCATGCTTAAGAATGTTTCAGAGGCTAAGTTCAAGCATATTCTTCTTCCTATAGCTGCTGCCTGTGTTGCAAATGACCAACAAGAACATGTAGATTTTGAATCATTCTTTACACATACAATTTGTCATGAATGCTGCCATGGAATTGGACCACATACCATAACACTTCCAAATGGCCAAAAGTCTACTGTCAGATTGGTCAGTTCCACAATATACTTCACTCGAGAAATTTCTTTGATTGCTAAAACTTTTGCAGTTAACTTAATAATAAAAGATACATAG
>Glyma.13g072500.1.p sequence-type=predicted peptide transcript=Glyma.13g072500.1 locus=Glyma.13g072500 ID=Glyma.13g072500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQQAEEHLDVLTKTGLKTGVSKPRGDVHRDGDYHRAVHVWIFAESTRELLLQRRASCKDSWPDLWDISSAGHISAGDSSLTSARRELEEELGITLPKDAFELIFVFLQECVINDGKYINNEYNDVYLVTTLDPIPLEAFVLQETEVSAVKYISYEEYKRLLAKEDSGYVPYDVNGQYGQLFDIIEKRYKENTVARSLTLQKQISRYAPISLSAELTGLTDSDKEALVFVVKAANVMDEIFYLQAWYSNPSLRDWLKEHADTSEFNKLKWSYYQINKSPWSSLDEDEAFLSTADSAIRLLSKATRIVKDWKGLEYRAAFPLLKPAGANFYPPDMDKMEFELWKDSLEKHEQKEATGFFSVIKRHSEFILDSHLSDNKTGSHDLYIVPYSEEYKSLLAKASDLLHKAGDISDSPGLKRLLHSKADAFLSNDYYDSDIAWMELDSKLDVTIGPYETYEDKLFGYKATFEAYIGIRDDEATAQLKLFGDNLLLLEQNLPMDSAYKSEDVNAAPIRVIQLLYNAGDVKGPQTLAFNLPNDERIVKDRGSSMVMLKNVSEAKFKHILLPIAAACVANDQQEHVDFESFFTHTICHECCHGIGPHTITLPNGQKSTVRLVSSTIYFTREISLIAKTFAVNLIIKDT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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