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Report for Sequence Feature Glyma.13g062800

Feature Type:gene_model
Chromosome:Gm13
Start:16067222
stop:16078901
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g062800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48600.2AT structural maintenance of chromosome 3 JGI N/AIEA
GO:0051276GO-bp chromosome organization EnsemblGenomesN/AIEA
GO:0051276GO-bp chromosome organization JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0005694GO-cc chromosome JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0996 KOG Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) JGI N/AIEA
PTHR18937Panther STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER JGI N/AIEA
PTHR18937:SF13Panther JGI N/AIEA
PF02463PFAM RecF/RecN/SMC N terminal domain JGI N/AIEA
PF06470PFAM SMC proteins Flexible Hinge Domain JGI N/AIEA

Expression Patterns of Glyma.13g062800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g062800
ParalogEvidenceComments
Glyma.19g022800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g062800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g05430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g062800
>Glyma.13g062800.1 sequence-type=CDS polypeptide=Glyma.13g062800.1.p locus=Glyma.13g062800 ID=Glyma.13g062800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCCCGCACGCCGAGTCCGCACCCGACTCAGCCACTCGCCGCCGCTCCTCCGCTCGGCCAAGGCTCTTCATAAAGGAGATGGTCATGCGCAACTTCAAATCCTACGCCGGCGAACAGCGCGTCGGTCCCTTCCACAAGAGTTTCTCCGCCGTGGTGGGACCTAACGGGAGCGGGAAGAGCAACGTCATAGATGCGATGCTGTTTGTGTTCGGGAAGCGAGCCAAGCAGATGCGGCTGAACAAAGTTTCGGAGCTAATACACAATTCCACCAATCACCAGAATTTGGATAGTGCAGGGGTTTCAGTTCATTTTCAAGAGATTGTGGATTCGGATGATGGAACATATGAGGCGGTTGCAGGAAGTGATTTTGTGATTACCAGGGTGGCTTTCCGGGACAACTCCTCTAAGTATTACATTAATGACCGCACAAGTAACTTTACAGAAGTTACGAAGAAACTGAAAGGGAAAGGTGTTGACCTTGACAATAACAGGTTTCTTATTCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAACCAAAAGCTCAAGGGCCTCATGATGAAGGTTTTCTAGAATATCTGGAGGATATCATTGGAACCAACAAATATGTGGAAAAGATTGATGAATCACACAAACTGTTAGAATCCTTGAATGAGAAAAGATCTGGGGTGGTACAAATGGTTAAGCTATCTGAGAAAGAAAGAGACAGCTTGGAGGATGTGAAGAACGAAGCAGAAGCATACATGCTTAAGGAGTTGTCTCTGTTGAAATGGCAAGAGAAAGCTACAAAGTTGGCCCTTGATGATACAGGTGGAAAAATGGATGAGTTACAAGGGAATGTTGCTACTCTAGAAGAAAGTCTCAAGGCAGAAAGGGATAAAATCCAAGATAGTAAACAAACTCTCAAAGAGCTTGAAACTACGCACAACAACTATATGAAAAGACAAGAGGAGTTAGATAATGATATGAGGAAGTGCAAGGAAGAGTTCAAAGAGTTTGAGAGGCAGGATGTGAAGTATCGAGAGGATTTTAAGCACGTGAATCAGAAGATCAAAAAGCTTGAGGATAAAGTAGAAAAGGATTCATCAAAAATTGAAGCCCTTATAAAAGAGGGTGAGGAATCAACTGTTCTGATACCAAAACTTGAGGACAATATCCCAAAATTGCAAAAGTTGTTGCTTGATGAGGAGAAGGTCTTAGAAGAAATCACAGAGAGTTCCAAAGTTGAAACTGAGAAATACCGCTCTGAGCTTGCTAAAGTTCGTGCTGAGCTTGAACCTTGGGAAAAAGATTTGATTGAGCACAATGGAAAACTTGAAGTTGCATGTACAGAGGCTAAGCTTCTAAATGATAAGCATGAAGGTGCTTCTCAAGCCTTTGAAGATGCTCAAAAGCAGATGAAAAGCATATCAGAAACAATTAAATCAAAAACTGCCAGCATTTCTCAAATCAACAGTGATATAGAAAAGAGGAAGCATGAAGCTTCAGAAGCTCACCAAATTGAAGAAGAATGTATCAAAGAGCAAGATGAACTGATTCCTCTTGAACAAAGTGCTAGACAGAAAGTTGCAGAACTGAAGTCTGTTCTAGATTCTGAGAAGAGTCAGGGATCAGTTCTTAAAGCAATCCTGAAAGCCAAGGAAACAAAACAAATAGAAGGAATATATGGTCGCATGGGTGATTTAGGTGCTATTGATGCAAAATATGATGTTGCAATATCAACAGCATGCCATGGACTTGATTATATTGTGGTGGAAACAACTAATGCAGCTCAAGCATGTGTTGAGTTACTTCGTAGAGAGAATCTTGGTGTTGCTACTTTCATGATATTGGAGAAGCAAGTTGATCTTCTTCCGAAGTTGAAAAAGAATGTAAGCACTCCAGAGGGGGTTCCACGCCTTTTTGATTTAGTGAAAGTTCAAGATGAAAGAATGAAGCTTGCTTTCTTTGCGGCACTTAGAAACACTGTGGTTGCTAAAGATCTTGACCAGGCAACACGTATAGCATATGGTGGAAACACTGAGTTTCGTCGAGTTGTTACCCTTGACGGTGCACTCTTTGAAAATTCGGGAACAATGAGTGGTGGGGGTGGTAAGCCCCGTGGTGGCAAGATGGGGACATCAATTCGAGCTACAAGCGTGTCTGTAGAAAGTGTTGCAAATGCTGAAAAAGAGTTGTCTAGGTTGACTGATAAACTGAATGACATCCGCCAAAGAATTATGGCTGCTGTGCAACGTTATCAGGCCTCAGAAAAAGCTGTTGCTGCTTTAGAAATGGAGTTAGCTAAAAGTCAGAAGGAGGTTGACAGTTTAAATTCACAATATAATTATATTGAAAAACAACTTGATTCCCTTGAGGCAGCATCAACGCCACAGGAGGATGAGCTCGACAGATTGAAAGAGCTGAAGAAGATTGTTTCTGCAGAAGAAAGGGAGATTAATAGACTAAATAATGGATCTAAACAACTGAAGGAAAAGGCTTTGGAGCTCCAGAGAAATTTAGAAAATGTTGGGGGTGAAAAGTTAAAATCTCAGAAGTCAAAGGTCCAGAAAATTCAATCTGATATTGATAGGAATAGTTCAGAAACAAACCGTCATAAGGTCCAAATAGAGACAGGACAAAAAATGGTGAAAAAATTGACTAAAGGAATTGAGGATTCAAAGAAGGAGAAAGACCGGCTTACTGAGCAAAAGGAGAAACTAACGCAAGCCTTCAAAGAAATAGAGCAGAAAGCATTTGTAGTTCAAGAGAATTATAAAAAAACCCAAAAGGTGATTGACGAACATATGATTGTCTTGGAGAAAGCAAAATCCGAGTACAATAAGATGAAAAAAGTGATGGATGAATTGCGTGCATCTGAGGTTGATGCTGAATTTAAATTAAAAGACATGAAGAAAGCATATAAAGAATTGGAAATGAAGGGGAAAGGTTACAAGAAAAGACTAGATGATTTGCAAACTGCTCTTCATAGGCATATTGAACAAATTCAGGCAGATTTAGTGGATCAAGAAAAGCTACAGGCTACATTGGCTGATGAACATCTTAATGCTGCTTGTGACCTGAAAAAGGCCTGTGAAATGGTTGCTCTGCTTGAAGCACAACTAAAGGAGATGAATCCAAATCTTGATTCAATTTCAGAATACCGAAAGAAGGTATCTTCGTACAATGAGCGAGTTGAAGAACTTAACGCAGTCACGCAGGAGCGGGATGACATAAAAAAGCAGTATGATGAATGGAGAAAGAAGAGATTGGACGAGTTTATGGAAGGATTTAATGCAATATCTTTAAAGTTAAAGGAAATGTATCAGATGATTACTCTTGGAGGTGATGCAGAACTTGAGCTTGTGGATTCTTTGGATCCTTTCTCTGAAGGTGTTGTGTTCAGTGTCAGACCACCAAAGAAAAGCTGGAAAAATATTGCAAATTTATCGGGTGGTGAAAAGACTCTTAGCTCGCTGGCTCTTGTATTTGCTCTTCATCATTACAAGCCTACCCCACTCTATGTAATGGATGAAATTGATGCTGCCCTGGACTTCAAGAATGTATCTATCGTCGGGCATTATGTGAAAGACAGGACCAAGGATGCTCAATTCATAATCATTAGTCTTAGGAACAATATGTTTGAATTGGCTGATCGACTTGTTGGGATATATAAAACTGATAATTGCACAAAGAGCATTACTATCAATCCGGGGAGTTTTGTGGTATGCGAAAAGGCTGTTTGA
Predicted protein sequences of Glyma.13g062800
>Glyma.13g062800.1.p sequence-type=predicted peptide transcript=Glyma.13g062800.1 locus=Glyma.13g062800 ID=Glyma.13g062800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPHAESAPDSATRRRSSARPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIVDSDDGTYEAVAGSDFVITRVAFRDNSSKYYINDRTSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKYVEKIDESHKLLESLNEKRSGVVQMVKLSEKERDSLEDVKNEAEAYMLKELSLLKWQEKATKLALDDTGGKMDELQGNVATLEESLKAERDKIQDSKQTLKELETTHNNYMKRQEELDNDMRKCKEEFKEFERQDVKYREDFKHVNQKIKKLEDKVEKDSSKIEALIKEGEESTVLIPKLEDNIPKLQKLLLDEEKVLEEITESSKVETEKYRSELAKVRAELEPWEKDLIEHNGKLEVACTEAKLLNDKHEGASQAFEDAQKQMKSISETIKSKTASISQINSDIEKRKHEASEAHQIEEECIKEQDELIPLEQSARQKVAELKSVLDSEKSQGSVLKAILKAKETKQIEGIYGRMGDLGAIDAKYDVAISTACHGLDYIVVETTNAAQACVELLRRENLGVATFMILEKQVDLLPKLKKNVSTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRIAYGGNTEFRRVVTLDGALFENSGTMSGGGGKPRGGKMGTSIRATSVSVESVANAEKELSRLTDKLNDIRQRIMAAVQRYQASEKAVAALEMELAKSQKEVDSLNSQYNYIEKQLDSLEAASTPQEDELDRLKELKKIVSAEEREINRLNNGSKQLKEKALELQRNLENVGGEKLKSQKSKVQKIQSDIDRNSSETNRHKVQIETGQKMVKKLTKGIEDSKKEKDRLTEQKEKLTQAFKEIEQKAFVVQENYKKTQKVIDEHMIVLEKAKSEYNKMKKVMDELRASEVDAEFKLKDMKKAYKELEMKGKGYKKRLDDLQTALHRHIEQIQADLVDQEKLQATLADEHLNAACDLKKACEMVALLEAQLKEMNPNLDSISEYRKKVSSYNERVEELNAVTQERDDIKKQYDEWRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFVVCEKAV*






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