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Report for Sequence Feature Glyma.13g060200

Feature Type:gene_model
Chromosome:Gm13
Start:15749985
stop:15754961
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g060200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13700.1AT purple acid phosphatase 23 JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0003993GO-mf acid phosphatase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR22953Panther ACID PHOSPHATASE RELATED JGI N/AIEA
PWY-6348SoyCyc9 phosphate acquisition Plant Metabolic Network ISS
GN7V-64113SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.13g060200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g060200 not represented in the dataset
Glyma.13g060200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g060200
ParalogEvidenceComments
Glyma.19g026600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g060200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g05731 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g060200
>Glyma.13g060200.2 sequence-type=transcript locus=Glyma.13g060200 ID=Glyma.13g060200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATCTGCACCACCTTTTTCATGCCACTGGCCATGGTTTTGGTGATGATGGCAGTGGCTGAGAGTCACATTCCCACCACTTTGGATGGCCCATTTGACCCAGTTACCCACCGGTTCGACCCATCACTGCGACAGGACAGTGAGGACTTGCCTGTGACTCATCCAAGGCTCAGAAAGAATGTCACTTCAAACTTCGCTGAACAGATTGCTCTTGCAATTTCTTCACCAACTTCCATGTGGGTTTCTTGGGTTACTGGGGATGCACAGATTGGCCTGAATGTGACCCCGATAGATTCTGCATCTGTTGAAAGTGAGGTGTGGTATGGGAAAGAGAGTGGAAAGTACATAAGTGTTAGGAAAGGTGATTCTGTTGTTTACAGTCTGTTGTATCCCTTTGAAGGCCTGTGGAATTACACCTCTGGTATCATTCACCATGTGAAACTCAAAGGTCTTGAACCTAGCACCAGATATTATTACAAATGTGGGGATAGTTCTACACCAGCAATGAGCCGAGAGTTTATTTTTGAGACTTTTCCAAAACCTAGTCCAAATAATTATCCAGCTCGAATAGCAGTTATTGGAGATTTGGGCCTCACAAGCAATTCAACATCAACTATTGATCATCTAAAATTCTAATGGGTGGAGATTTAACATATGCAAATCATATGCTAGTTGAAAAACGAAATGGGTTTTTGAAACAAAAGGTTTATGGAGCCTTTGACCTCAGAAATTCCGGTGATGGTTATTGAAGGGAATCATGAGACTGAACCTCAAGCCAGTGGAATCACATTCAAATCATACTGTTAGAGCATCAAAGAGGACTctaaattctactactaatcaagctaagtaattgtaccgagtaaattgttccttgcttctgttatttacttatgcggtatttataattgcgattacaatgggtgcaggcactattgaccatgatgagggggaacaactcttaacggaatacaaaatatctcctaactgaatattgtggaatatcctaGATGGGCAGACAGGGTGAAACAATGGTGTTTGCTTGTCGGGACACTACTCGTAGTCACGAAGGTACGCAGGTGCTTTGTGTATCCTTATGGGCTGTATTACTAACACATACCTGATACAATTTGCAGTTCCTGCTGAAGAAAGTGGCTTTAAAAGTAAGTTCTACTACTCTTTTGATGCTGGGGGCATACACTTTATCATGTTGGGAGCATATGTTGATTACAATAGCACTGGTGGAGTAGAGCTAGGTTTTGGACAATCACTCATCTAAATCTTGTCAAATAGTGGTCAGGATAACCTATTTATGTTTCCGTTATTTTTCATTTTTTTTCTGCCGTTATCATGTCATATATCTTCCATGTAACAAATAAAAAGGTAAATGCTCATGGCACTAAAGAAGTTAAAGTAAAAATATTTTTATTAAAAGATGGAAAATTGTATTATTTATAATTTTTTTGTGCTCTCATATGA
Coding sequences of Glyma.13g060200
>Glyma.13g060200.1 sequence-type=CDS polypeptide=Glyma.13g060200.1.p locus=Glyma.13g060200 ID=Glyma.13g060200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATCTGCACCACCTTTTTCATGCCACTGGCCATGGTTTTGGTGATGATGGCAGTGGCTGAGAGTCACATTCCCACCACTTTGGATGGCCCATTTGACCCAGTTACCCACCGGTTCGACCCATCACTGCGACAGGACAGTGAGGACTTGCCTGTGACTCATCCAAGGCTCAGAAAGAATGTCACTTCAAACTTCGCTGAACAGATTGCTCTTGCAATTTCTTCACCAACTTCCATGTGGGTTTCTTGGGTTACTGGGGATGCACAGATTGGCCTGAATGTGACCCCGATAGATTCTGCATCTGTTGAAAGTGAGGTGTGGTATGGGAAAGAGAGTGGAAAGTACATAAGTGTTAGGAAAGGTGATTCTGTTGTTTACAGTCTGTTGTATCCCTTTGAAGGCCTGTGGAATTACACCTCTGGTATCATTCACCATGTGAAACTCAAAGGTCTTGAACCTAGCACCAGATATTATTACAAATGTGGGGATAGTTCTACACCAGCAATGAGCCGAGAGTTTATTTTTGAGACTTTTCCAAAACCTAGTCCAAATAATTATCCAGCTCGAATAGCAGTTATTGGAGATTTGGGCCTCACAAGCAATTCAACATCAACTATTGATCATCTAAAATTCTAA

>Glyma.13g060200.2 sequence-type=CDS polypeptide=Glyma.13g060200.2.p locus=Glyma.13g060200 ID=Glyma.13g060200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATCTGCACCACCTTTTTCATGCCACTGGCCATGGTTTTGGTGATGATGGCAGTGGCTGAGAGTCACATTCCCACCACTTTGGATGGCCCATTTGACCCAGTTACCCACCGGTTCGACCCATCACTGCGACAGGACAGTGAGGACTTGCCTGTGACTCATCCAAGGCTCAGAAAGAATGTCACTTCAAACTTCGCTGAACAGATTGCTCTTGCAATTTCTTCACCAACTTCCATGTGGGTTTCTTGGGTTACTGGGGATGCACAGATTGGCCTGAATGTGACCCCGATAGATTCTGCATCTGTTGAAAGTGAGGTGTGGTATGGGAAAGAGAGTGGAAAGTACATAAGTGTTAGGAAAGGTGATTCTGTTGTTTACAGTCTGTTGTATCCCTTTGAAGGCCTGTGGAATTACACCTCTGGTATCATTCACCATGTGAAACTCAAAGGTCTTGAACCTAGCACCAGATATTATTACAAATGTGGGGATAGTTCTACACCAGCAATGAGCCGAGAGTTTATTTTTGAGACTTTTCCAAAACCTAGTCCAAATAATTATCCAGCTCGAATAGCAGTTATTGGAGATTTGGGCCTCACAAGCAATTCAACATCAACTATTGATCATCTAAAATTCTAA
Predicted protein sequences of Glyma.13g060200
>Glyma.13g060200.1.p sequence-type=predicted peptide transcript=Glyma.13g060200.1 locus=Glyma.13g060200 ID=Glyma.13g060200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKICTTFFMPLAMVLVMMAVAESHIPTTLDGPFDPVTHRFDPSLRQDSEDLPVTHPRLRKNVTSNFAEQIALAISSPTSMWVSWVTGDAQIGLNVTPIDSASVESEVWYGKESGKYISVRKGDSVVYSLLYPFEGLWNYTSGIIHHVKLKGLEPSTRYYYKCGDSSTPAMSREFIFETFPKPSPNNYPARIAVIGDLGLTSNSTSTIDHLKF*

>Glyma.13g060200.2.p sequence-type=predicted peptide transcript=Glyma.13g060200.2 locus=Glyma.13g060200 ID=Glyma.13g060200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKICTTFFMPLAMVLVMMAVAESHIPTTLDGPFDPVTHRFDPSLRQDSEDLPVTHPRLRKNVTSNFAEQIALAISSPTSMWVSWVTGDAQIGLNVTPIDSASVESEVWYGKESGKYISVRKGDSVVYSLLYPFEGLWNYTSGIIHHVKLKGLEPSTRYYYKCGDSSTPAMSREFIFETFPKPSPNNYPARIAVIGDLGLTSNSTSTIDHLKF*






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