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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52530.1 | AT | JGI | N/A | IEA | |
| GO:0000077 | GO-bp | DNA damage checkpoint | EnsemblGenomes | N/A | IEA |
| GO:0000077 | GO-bp | DNA damage checkpoint | JGI | N/A | IEA |
| GO:0000724 | GO-bp | double-strand break repair via homologous recombination | EnsemblGenomes | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | JGI | N/A | IEA |
| GO:0006289 | GO-bp | nucleotide-excision repair | EnsemblGenomes | N/A | IEA |
| GO:0031573 | GO-bp | intra-S DNA damage checkpoint | EnsemblGenomes | N/A | IEA |
| GO:0033314 | GO-bp | mitotic DNA replication checkpoint | EnsemblGenomes | N/A | IEA |
| GO:0044778 | GO-bp | meiotic DNA integrity checkpoint | EnsemblGenomes | N/A | IEA |
| GO:0005730 | GO-cc | nucleolus | EnsemblGenomes | N/A | IEA |
| GO:0030896 | GO-cc | checkpoint clamp complex | EnsemblGenomes | N/A | IEA |
| GO:0030896 | GO-cc | checkpoint clamp complex | JGI | N/A | IEA |
| GO:0035861 | GO-cc | site of double-strand break | EnsemblGenomes | N/A | IEA |
| KOG3999 | KOG | Checkpoint 9-1-1 complex, HUS1 component | JGI | N/A | IEA |
| PTHR12900 | Panther | MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 | JGI | N/A | IEA |
| PF04005 | PFAM | Hus1-like protein | JGI | N/A | IEA |
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Glyma.13g059800 not represented in the dataset |
Glyma.13g059800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g05780 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g059800.1 sequence-type=CDS polypeptide=Glyma.13g059800.1.p locus=Glyma.13g059800 ID=Glyma.13g059800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAATTCAAGGCCTTCGTGACCGACAACGGCGTGCAGCTCCTGGAGAGGCGGTTCCTCCCGGCCCTGGAGAGAACGGGAAAATCGTGCCACCTCTTCCTCACGCGCGACCACGCCATGTTCCTCCACCTCCTCAACGGCGACGGCGTCCAGTGCCTCGCGCAGTTCCGCAAGGAGGCGCTCTTCCACGACTACCGCATATCCAGCCAGAACGACGACCGCATCGCCTTCGCTCTCGACCTCTCCCTCCTCCTCCGCGCCCTCCGCAGCGCCGTCGCCGTCGCCTCCTCCGCCTCCGCTTCCTCCGCCCCCACGCGCCTCGAGATCAAGCTCGTCAAGAAACTTCCCCCTAATTCCACCCAGCCCATGCCCTACCTCACATTGGAAACTCGCGGGTATAAGTCTGCGGTTATTCAGGATATTCCCATCTCCAAACCCTTGTCGCGGGCGCAGGTTACCGAGCTTCAGAGCGCGCTCGATACGGCGCAAGATCTCCCTCAAACACTCGTTCAGGTGCCTGATTTGAATCAATTGTTAAACTTGGTGGATCGGATGAAGCAGGTGGGCGATGTTGTGAATGTGTTCATAAGTAAGCATGGGGATTTGAGCGTGCAGGTTTCAACCACGCTGATTAGTTTGGGTGCTGAGTTTCGGAGACTGGTGGTGATTGGAGAGAAAACTAATGCTCCTGCTGAAGATCAAAATCTCAGTGCTCAGACAAGATCATCGAGGTCCATTTCGAGAGGAGATGGGCAATATGTGCAGGTGAGTGTTAAGCACTTCGCCAAAAGCCTCCAGTGTCACTTGACCAGACCAGACTGCACTTTCTTTGGGATTGCTCCGCAGGGTAGTTGCCTGACGGTGATATTTCAGTTCTTTGTCCCAGGTTCTCGCCAGACTGATAAATCAATCAGCTTGCATTGCAGGCTTCCTGTTCTTGACCCTGGTTCTGGTTAA
>Glyma.13g059800.1.p sequence-type=predicted peptide transcript=Glyma.13g059800.1 locus=Glyma.13g059800 ID=Glyma.13g059800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKFKAFVTDNGVQLLERRFLPALERTGKSCHLFLTRDHAMFLHLLNGDGVQCLAQFRKEALFHDYRISSQNDDRIAFALDLSLLLRALRSAVAVASSASASSAPTRLEIKLVKKLPPNSTQPMPYLTLETRGYKSAVIQDIPISKPLSRAQVTELQSALDTAQDLPQTLVQVPDLNQLLNLVDRMKQVGDVVNVFISKHGDLSVQVSTTLISLGAEFRRLVVIGEKTNAPAEDQNLSAQTRSSRSISRGDGQYVQVSVKHFAKSLQCHLTRPDCTFFGIAPQGSCLTVIFQFFVPGSRQTDKSISLHCRLPVLDPGSG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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