Glyma.13g059400

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Report for Sequence Feature Glyma.13g059400

Feature Type:	gene_model
Chromosome:	Gm13
Start:	15683403
stop:	15687370
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g059400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29200.1	AT	chorismate mutase 1	JGI	N/A	IEA
GO:0008652	GO-bp	cellular amino acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009073	GO-bp	aromatic amino acid family biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0046417	GO-bp	chorismate metabolic process	EnsemblGenomes	N/A	IEA
GO:0046417	GO-bp	chorismate metabolic process	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0004106	GO-mf	chorismate mutase activity	EnsemblGenomes	N/A	IEA
GO:0016853	GO-mf	isomerase activity	EnsemblGenomes	N/A	IEA
KOG0795	KOG	Chorismate mutase	JGI	N/A	IEA
PTHR21145	Panther	CHORISMATE MUTASE	JGI	N/A	IEA
PF01817	PFAM	Chorismate mutase type II	JGI	N/A	IEA
PWY-3461	SoyCyc9	L-tyrosine biosynthesis II	Plant Metabolic Network		ISS
PWY-3462	SoyCyc9	L-phenylalanine biosynthesis II	Plant Metabolic Network		ISS
PWY-3481	SoyCyc9	superpathway of L-phenylalanine and L-tyrosine biosynthesis	Plant Metabolic Network		ISS
PWY-6120	SoyCyc9	L-tyrosine biosynthesis III	Plant Metabolic Network		ISS
GN7V-45615	SoyCyc9-rxn	chorismate mutase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g059400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g059400 not represented in the dataset	Glyma.13g059400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g059400

Paralog	Evidence	Comments
Glyma.19g027100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g059400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g05830	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g059400

Limit To All Plant Sequences

>Glyma.13g059400.2 sequence-type=transcript locus=Glyma.13g059400 ID=Glyma.13g059400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTTGGTGTGGTCACTCACATCTCCACCTACTGCGTTTCAGGAGTCGACAACCTTTGAATTTCTCATTTCTCATCCACTAACTTCTTTCTCAATCCCTCTTTTTCTTTTTTATGTTTTAAACTCTTTTAAAAGCTTCTTCCCTCTTTGCCGAATTTTCCATAAACCACATTCTTGTTGGTTCTCTTTCAATGGAGTCTAAGCTTTTAAGAGCCACCACCATCTCAGTCCCTTCAACACCCTCATGCGCTTTCCATCGCACAACTCGCAAGGCTTCGATTTCCTTCAACCCCACCTCGGATTTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGTCTCATCGAGCGAGCACAATACTGTTACAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCATGGCTCATTGGTTGAGTACATGGTCGGGGAAACTGAGAGGCTTCATGCCAAGGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGGCTCTCTCAAAGAGAATTCATTATGGAAAATATGTAGCTGAGGCAAAATACCAAGCTAGTCCAGATTCATATAAAGATGCCATTATAGCACAGGACAAGGACAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAGAGGAGAGTTGACATGAAGACCAAGACTTATGGGCAAGAACTGGTTGTAACTACGAAGGAACATCGAACTGAACCTGTCTACAAAATAAATCCAAGCTTGGTTGCTGATCTATACAGTGATTGGATCATGCCATTGACAAAGGAAGTCCAAGTTTCTTATTTATTGAGAAGGTTGGATTGAACATAACAAAAAGTACCTTTTCAATTACAGTGTTCATAGGGTATTTATATTTTCTAGGAAATGATACTTGCAATGGGTAATTTCTCTTGAATCATGACTATAAACTTTAGTTTTTGTAATTAACATATGAGGAAGCTCATATTGGGTTCTTATATAATAATTAATGGCATCCTTTATGTTGTTT

Coding sequences of Glyma.13g059400

Limit To All Plant Sequences

>Glyma.13g059400.1 sequence-type=CDS polypeptide=Glyma.13g059400.1.p locus=Glyma.13g059400 ID=Glyma.13g059400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTCTAAGCTTTTAAGAGCCACCACCATCTCAGTCCCTTCAACACCCTCATGCGCTTTCCATCGCACAACTCGCAAGGCTTCGATTTCCTTCAACCCCACCTCGGATTTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGTCTCATCGAGCGAGCACAATACTGTTACAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCATGGCTCATTGGTTGAGTACATGGTCGGGGAAACTGAGAGGCTTCATGCCAAGGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGGTGTTGCACCCTATTGCTGATTCAATTAATATAAATGAAAAAGTATGGAGTTTATACTTCAGAGTTCTTATCCCACAAATAGTCAAACAAGGGGATGATGGTAACTCTGGATCCAGTGCTGTTTGTGATGTAATATGCTTGCAGGCTCTCTCAAAGAGAATTCATTATGGAAAATATGTAGCTGAGGCAAAATACCAAGCTAGTCCAGATTCATATAAAGATGCCATTATAGCACAGGACAAGGACAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAGAGGAGAGTTGACATGAAGACCAAGACTTATGGGCAAGAACTGGTTGTAACTACGAAGGAACATCGAACTGAACCTGTCTACAAAATAAATCCAAGCTTGGTTGCTGATCTATACAGTGATTGGATCATGCCATTGACAAAGGAAGTCCAAGTTTCTTATTTATTGAGAAGGTTGGATTGA

>Glyma.13g059400.2 sequence-type=CDS polypeptide=Glyma.13g059400.2.p locus=Glyma.13g059400 ID=Glyma.13g059400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTCTAAGCTTTTAAGAGCCACCACCATCTCAGTCCCTTCAACACCCTCATGCGCTTTCCATCGCACAACTCGCAAGGCTTCGATTTCCTTCAACCCCACCTCGGATTTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGTCTCATCGAGCGAGCACAATACTGTTACAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCATGGCTCATTGGTTGAGTACATGGTCGGGGAAACTGAGAGGCTTCATGCCAAGGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGGCTCTCTCAAAGAGAATTCATTATGGAAAATATGTAGCTGAGGCAAAATACCAAGCTAGTCCAGATTCATATAAAGATGCCATTATAGCACAGGACAAGGACAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAGAGGAGAGTTGACATGAAGACCAAGACTTATGGGCAAGAACTGGTTGTAACTACGAAGGAACATCGAACTGAACCTGTCTACAAAATAAATCCAAGCTTGGTTGCTGATCTATACAGTGATTGGATCATGCCATTGACAAAGGAAGTCCAAGTTTCTTATTTATTGAGAAGGTTGGATTGA

Predicted protein sequences of Glyma.13g059400

Limit To All Plant Sequences

>Glyma.13g059400.1.p sequence-type=predicted peptide transcript=Glyma.13g059400.1 locus=Glyma.13g059400 ID=Glyma.13g059400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESKLLRATTISVPSTPSCAFHRTTRKASISFNPTSDFAPKSNLSLQAHAASIESVPTKKRIDESDNLTLDHIRRSLVRQEDSIIFSLIERAQYCYNEDTYDPDAFSMDGFHGSLVEYMVGETERLHAKVGRYKSPDEHPFFPDGLPEPVLPPLQYPQVLHPIADSININEKVWSLYFRVLIPQIVKQGDDGNSGSSAVCDVICLQALSKRIHYGKYVAEAKYQASPDSYKDAIIAQDKDKLMELLTYPEVEEAIKRRVDMKTKTYGQELVVTTKEHRTEPVYKINPSLVADLYSDWIMPLTKEVQVSYLLRRLD*

>Glyma.13g059400.2.p sequence-type=predicted peptide transcript=Glyma.13g059400.2 locus=Glyma.13g059400 ID=Glyma.13g059400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESKLLRATTISVPSTPSCAFHRTTRKASISFNPTSDFAPKSNLSLQAHAASIESVPTKKRIDESDNLTLDHIRRSLVRQEDSIIFSLIERAQYCYNEDTYDPDAFSMDGFHGSLVEYMVGETERLHAKVGRYKSPDEHPFFPDGLPEPVLPPLQYPQALSKRIHYGKYVAEAKYQASPDSYKDAIIAQDKDKLMELLTYPEVEEAIKRRVDMKTKTYGQELVVTTKEHRTEPVYKINPSLVADLYSDWIMPLTKEVQVSYLLRRLD*

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