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Report for Sequence Feature Glyma.13g057300

Feature Type:gene_model
Chromosome:Gm13
Start:15485529
stop:15505747
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g057300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15540.1AT PHD finger family protein JGI N/AIEA
GO:0007049GO-bp cell cycle EnsemblGenomesN/AIEA
GO:0010468GO-bp regulation of gene expression EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1020 KOG Sister chromatid cohesion protein SCC2/Nipped-B JGI N/AIEA
PTHR21704Panther NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED JGI N/AIEA
PTHR21704:SF13Panther JGI N/AIEA

Expression Patterns of Glyma.13g057300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g057300 not represented in the dataset
Glyma.13g057300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g057300
ParalogEvidenceComments
Glyma.19g029100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g057300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g06105 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g057300
>Glyma.13g057300.1 sequence-type=CDS polypeptide=Glyma.13g057300.1.p locus=Glyma.13g057300 ID=Glyma.13g057300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTTCCCTGCCACCTCTGGCGCCTCGGCCGCCGCGCTGTCGTCCTCCGGCCACCGCGGAATCGGCCTCTCCAACACCGTCCACTCCGAGCTCGCCGCGTGCCTCCCGCTGCCGTCCCTCCCGGTCTTCTGCGGCGCCTCCGATCAGGACCTCCGCCTCGTGGACTCGCCGGCGCGCCTCAACCGCGTCGACGTGCTCGCTCAGTCCGCCAAGATCGCCGAGCTGCTCCGCCACACCGATGTGTCGTACTTGAATTTAAGAGGTGAAGCCAAAGGTGTTCCGTATATATATGTTGAGCCTTTAGAACTCCATGACGAAGTTATCAGGTGCAATCCTGAAGCATTTGAATACAGCACTGCAGGTCCTGTCAAGGAGCAGATCTATGGTAGTGCAGTATCTGAAAAAAGGAAACCGGAATCAAGTTTTCCTATCCAAAGAGAGACTCAAAAAGACTATAATGCAACACATAGTCGCCAGCTTGATAATTTTTCCACAAATGATATCTCTTCGTTGTCTTCTAAAAAATCAAAAATAAAAAAGAAAGGTGGTGATGGAATATCTGTAGCACCTGATTCTGCTGAGCTTCAAGGTGCCTACATTGAAAGGTTTCGTGAGTTTTTGGAGGACTTGTGCAACAAATCTGAATTTAATAGTGACGATCGAGATGAAGCAGAATGGTTGCCATTGCCTCTTACAGATCTTAGATTACTTGTCAATGAAATAACATCTATTCGTGAAAAGAAACTTCTGCATTTGGTTCCTGTAGAAGTCCTAGTTAGACTATTAAAAGTTCTAGATCATCAGATACATAGAGCAGAAGGCCTGTCAATTGAGGAATGTGATAATTCAGATTCAGAATTAGTTTCATCTGTTTTAATTGCATTGGAGTCCATTCATGCTGCACTAGCAGTGATGGCTCATACTGATATGCCAAAGCAACTCTATAAAGAAGAGATCATTGAGCGAATTCTGGAGTTTTCCAGGCATCAAATAATGGATGTTATGTGTGCATGTGATCCATCATACCGTGCGCTACATAGACCTAGTGAAAACACTGCATTTGAAGTTGATGATTATGAAGATAATGATGCTGAATTTGGTTCAGCCAGCAAGAAACGGCGTACTAGCAAGACTTCGAAGTTGAAGAAATCAGTATCAAGCAGGGTCTCTACTGCTGTAAATACTATTCTTCAGAAGCTGTGCACTATTCTTGGGTTACTCAAAGATTTGTTGTTAATAGAGAGGTTATCAGATAGTTGCATACTACAACTTGTAAAAACAAGCATTACGACATTTTTGGTTGATAATATCCAGCTTTTGCAATTGAAGGCAATCAGTTTACTCAGTGCGATATTCTATTTATACACACAACATCGCACTTATGTGATGGATGAAGTGGTTCAACTTCTGTGGAAATTACCATATTCAAAACGAGCTTTAAGGTCTTATCACATACGCGAGGAAGAGCAAAGGCAGATCCAAATGGTTACTGCTTTGCTGATTCAGTTGATTCATTGTAGTGCTAACCTCCCTGATGCTTTAAGAAAAGCTTCAAATGGTAATGCTGTATTAGAAGCCTCTGTTGATGCTAGTTATCCAATTAAATGCCACGAGGCAGCGACAGAAGCCTGCTGTCTGTTTTGGAGCCGGGTACTTCAGCGGTTTGCAAGTGTGAAGACTCATGATGCTTCGGAGCTGAAATCCATAATAGAGAATCTTGTTACAGATTTACTGACAACTTTAAATTTACCTGAATATCCTGCTTCAGCTCCTATTCTAGAGGTACTCTGCGTCCTACTACTTCAGAATGCTGGGCCAAAGTCTAAGGATGTCTCTGCACGTTCCCTGGCAATTGATATTCTTGGTACAATTGCTGCAAGGTTGAAGCGCGATGCTTTGGTTTGTAGCCAGGAAAAATTCTGGATACTTCAGGATTTACTTAATCAGGATGCTGCTGCTCAGCATCATCCAAAAGATACATGTTGTGTCTGTTTGGGGGGAAGGGTAGAAAATTTGTTCATATGTCATGGTTGCCAGAGGCTTTTTCATGCTGATTGCCTGGGCATTAAAGAACATGAAGTTTCCAGTCGAAACTGGTCCTGCCAGACATGCATCTGTCATAAGAAACTACTTGTATTACAATCATGTTGCAATTCCCAGCAAAAGAATGATGTGAAAAAGAATTGCAATACAGATTCTGAAGTTTCTAAGCAAGAGATTGTTCAACAGTTGCTTCTGAATTACCTTCAAGACGTTACCTCTGCTGATGATCTGCATCTTTTCATCTGCTGGTTTTATCTCTGCTTGTGGTACAAAGATGATTCAAATTGTCAGCAGAAGTCCAGTTACTACCTTGCTAGAATGAAATCAAAAATCATAGTACGAGATTCTGGTACTGTGTCTTCTATATTGACTAGGGATTCAATCAAGAAGATTACTTCAGCTTTAGGCCAAAACAGTTCATTTTGCCGAGGATTTGATAAAATTCTTCACACGCTTCTGGCAAGCTTGATGGAGAACTCTCCAGTTATTAGGGCTAAGGCTTTAAAAGCAGTTAGTATTATTGTAGAGGCTGATCCAGAGGTATTGGGTGATAAGCGAGTACAATCAGCTGTTGAAGGAAGGTTTTGTGATTCTGCGATATCTGTTAGAGAAGCAGCATTGGAACTTGTTGGTAGGCATATTGCTTCGCATCCAGGTGTGGGTTTTAAGTATTTTGAGAAGATTGCAGAGAGAATCAAAGATACTGGAGTAAGTGTTCGGAAACGAGCTATCAAAATCATTCGAGATATGTGCACTTCAAATGCCAACTTCTCTGGATTTACAAGAGCTTGCACAGAGATAATTTCACGTGTTAGTGATGATGAAGCAAGCATCCAGGACCTTGTTTGCAAAACATTTAGTGAGTTTTGGTTTGAGGAGCCTCCTGCATCACAAACTCAGGTCTTTGGGGATGGTAGTACTGTTCCACTTGAGATAGTTAAGAAAACAGAGCAAATTGTTGAAATGTTGAGAGGAATGCCCAATAATCAACTTCTTGTAAGTGTAATAAAGCGCAATTTGTCACTTGATTTTTTACCACAATCTGCAAAAGCTGTTGGGGTAAATCCAGTGTCCCTTGCAATAGTGCGTAAGCGTTGTGAATTGATGTGCAAATGCTTGCTGGAGAAGATGTTGCAGGTTGACGAAATGAACAATGATGGAGTGGAAGTGGGTGCACTTCCATATGTGTTAGTCTTGCATGCATTTTGTCTTGTGGACCCAACTCTCTGTGCACCAGCTTCAAACCCTTCCCAATTTGTTGTTACATTGCAGCCATATCTGAAGAGTCAGGTTGACAATCGCATGGTTGCACAGCTACTTGAGAGTATACTATTCATAATTGATGCTGTGCTTCCCATGCTTGGGAAGTTGCCTCCGAGTATTGTTGGGGAACTCGAGCAAGATTTGAAACAGATGATTGTCCGGCATTCTTTCTTGACAGTTGTCCATGCCTGTATCAAATGCCTCTGCTCTGTGAGTAAGATGTCTGGAAAAGGGGCTGCTGTAGTTGAACAACTTATTCAGTTCTTCTTCAAATGTTTGGATACTCAGGCAGTTGATAACAAACAGAAAGTTGGACGATCTCTCTTCTGTCTTGGGTTGCTTATCCGTTATGGCAATCAATTGTTAGCAAGCTCCAGTAGTAAACTCATTGATGTTGGACGCAGTGTCAGATTGTTTATGAAGTATCTCTCTGTGGAGGATTTTGTTGTCAAGGTTAGATCACTGCAGGCACTAGGATTTGTTCTAATTGCTAAGCCTGAATATATGTTGGAAAATGATGTTGGAAAAATACTGGAGGAAACATTATCCTCTGCGTCTGATACTCGCATTAAGATTCAAGGATTGCAAAACATGTTCGAGTATCTTCTAGAAGCTGAAAGCCAAATGGGAACCGATAAAAATGATGAAAATGTTGCTGGTTATTCAGTTGGAGCTGGGCATAGTGTACCTGTTGCTGCTGGTGCTGGGGATACAAACATATGTGGGGGTATAGTTCAGTTGTATTGGGATAATATTTTGGGCAGATGTTTGGATTTCAGTGAACAAGTTCGTCAATCAGCCCTGAAGATTGTTGAAGTTGTGCTGCGCCAAGGTCTTGTTCATCCAATCACCTGTGTTCCATACCTTATAGCCCTTGAAACAGATCCTCTGGAGTCGAATTCAAAGTTGGCTCATCATCTTCTGATGAATATGAATGACAAGTACCCTGCATTTTTTGAAAGCCGCTTGGGTGATGGACTTCAAATGTCATTTATGTTTATGCAATCTATTTGTGGAAGTTCTGAAAATGTTGATCATAAGATTCAATCTAAGATCCCTACTTCTGGAAAAGGGAAGCCTGAGGCTGGGTCACTTGCTCAAGCTAAACTTGGGGTTTCTCGAATTTACAAGCTCATCCGAGGGAATCGGGTATCAAGGAACAAATTTTTGTCCTCAATCGTGCGGAAATTTGATAATCCAAGATGGAATAAATTAGTAATAGCTTTCTTAATATACTGCACAGAAGTCCTAGCATTGCTGCCATTCATTTCACCTGATGAGCCCCTTTATTTAATCTATGCTATCAATCGAGTAGTTCAAGTAAGGGCCGGACCACTAGAAGCAAACTTTAAAGCCTGGAGTTCAAGCATTTCACGTCATAACTCACCTTATGGGAATGGAATGTATCAACAGGGGCCAGATGAGCCTACTGTTACAAGCCAAGTAATGTCATTGGATTTGAATGGAACATTTCAGCAAAATGTAGATGTTCAGCCAAATTCCAATGACATGAGAACCCTGGATTTAAATGGATCAAATCATCAACTGCCAGATTATCCTTTATCGTATATGGGTAGCTCAGAAGCAAAGCTGCATTCTGCAGGTTACACAGATCCTTTTTCCTTCTCAAATGATGATCTGGAGAAAGTTCAGGCCGATTGTTTATCAGCAATTGCATTGCAGCTTCTTTTGAAGCTCAAGAGACACCTGAAAATCATGTATAGTCTTGATGATGCCCGTTGTCAGGCTTATTCTCCTACCGAACAACCGAAACCTGGAGAGGTTATCTCCAGACAGAATATTGCTTTTAATATCGGTGATTCACAGTTCAGTTTGCCTACAAGTCCGCAAGAATTGATACAAAGATATCAGGAATTTAAACATGCTTTGAGGGAAGACACTGTGGACTATTCACATTACACTGCAAATATAAAACGAAAGCGACCTACAGCCACACCAAGAAGAGTTCAAGTTCGGAAACCTGTATACGTGGCAGGTGGGTACGATGATGGGGATGATGATGGGGATTATACTGGTGGAAGTGAGATGCACAAGATAAGTTTTAGTGGCCGCAGGAGTAGCCTTAGAAACTCAAGGCAATATTGA
Predicted protein sequences of Glyma.13g057300
>Glyma.13g057300.1.p sequence-type=predicted peptide transcript=Glyma.13g057300.1 locus=Glyma.13g057300 ID=Glyma.13g057300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFPATSGASAAALSSSGHRGIGLSNTVHSELAACLPLPSLPVFCGASDQDLRLVDSPARLNRVDVLAQSAKIAELLRHTDVSYLNLRGEAKGVPYIYVEPLELHDEVIRCNPEAFEYSTAGPVKEQIYGSAVSEKRKPESSFPIQRETQKDYNATHSRQLDNFSTNDISSLSSKKSKIKKKGGDGISVAPDSAELQGAYIERFREFLEDLCNKSEFNSDDRDEAEWLPLPLTDLRLLVNEITSIREKKLLHLVPVEVLVRLLKVLDHQIHRAEGLSIEECDNSDSELVSSVLIALESIHAALAVMAHTDMPKQLYKEEIIERILEFSRHQIMDVMCACDPSYRALHRPSENTAFEVDDYEDNDAEFGSASKKRRTSKTSKLKKSVSSRVSTAVNTILQKLCTILGLLKDLLLIERLSDSCILQLVKTSITTFLVDNIQLLQLKAISLLSAIFYLYTQHRTYVMDEVVQLLWKLPYSKRALRSYHIREEEQRQIQMVTALLIQLIHCSANLPDALRKASNGNAVLEASVDASYPIKCHEAATEACCLFWSRVLQRFASVKTHDASELKSIIENLVTDLLTTLNLPEYPASAPILEVLCVLLLQNAGPKSKDVSARSLAIDILGTIAARLKRDALVCSQEKFWILQDLLNQDAAAQHHPKDTCCVCLGGRVENLFICHGCQRLFHADCLGIKEHEVSSRNWSCQTCICHKKLLVLQSCCNSQQKNDVKKNCNTDSEVSKQEIVQQLLLNYLQDVTSADDLHLFICWFYLCLWYKDDSNCQQKSSYYLARMKSKIIVRDSGTVSSILTRDSIKKITSALGQNSSFCRGFDKILHTLLASLMENSPVIRAKALKAVSIIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALELVGRHIASHPGVGFKYFEKIAERIKDTGVSVRKRAIKIIRDMCTSNANFSGFTRACTEIISRVSDDEASIQDLVCKTFSEFWFEEPPASQTQVFGDGSTVPLEIVKKTEQIVEMLRGMPNNQLLVSVIKRNLSLDFLPQSAKAVGVNPVSLAIVRKRCELMCKCLLEKMLQVDEMNNDGVEVGALPYVLVLHAFCLVDPTLCAPASNPSQFVVTLQPYLKSQVDNRMVAQLLESILFIIDAVLPMLGKLPPSIVGELEQDLKQMIVRHSFLTVVHACIKCLCSVSKMSGKGAAVVEQLIQFFFKCLDTQAVDNKQKVGRSLFCLGLLIRYGNQLLASSSSKLIDVGRSVRLFMKYLSVEDFVVKVRSLQALGFVLIAKPEYMLENDVGKILEETLSSASDTRIKIQGLQNMFEYLLEAESQMGTDKNDENVAGYSVGAGHSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFSEQVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLESNSKLAHHLLMNMNDKYPAFFESRLGDGLQMSFMFMQSICGSSENVDHKIQSKIPTSGKGKPEAGSLAQAKLGVSRIYKLIRGNRVSRNKFLSSIVRKFDNPRWNKLVIAFLIYCTEVLALLPFISPDEPLYLIYAINRVVQVRAGPLEANFKAWSSSISRHNSPYGNGMYQQGPDEPTVTSQVMSLDLNGTFQQNVDVQPNSNDMRTLDLNGSNHQLPDYPLSYMGSSEAKLHSAGYTDPFSFSNDDLEKVQADCLSAIALQLLLKLKRHLKIMYSLDDARCQAYSPTEQPKPGEVISRQNIAFNIGDSQFSLPTSPQELIQRYQEFKHALREDTVDYSHYTANIKRKRPTATPRRVQVRKPVYVAGGYDDGDDDGDYTGGSEMHKISFSGRRSSLRNSRQY*






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