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Report for Sequence Feature Glyma.13g055500

Feature Type:gene_model
Chromosome:Gm13
Start:15288951
stop:15291189
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g055500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G34930.1AT arogenate dehydrogenase JGI N/AIEA
GO:0006098GO-bp pentose-phosphate shunt JGI N/AIEA
GO:0006571GO-bp tyrosine biosynthetic process EnsemblGenomesN/AIEA
GO:0006571GO-bp tyrosine biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004616GO-mf phosphogluconate dehydrogenase (decarboxylating) activity JGI N/AIEA
GO:0004665GO-mf prephenate dehydrogenase (NADP+) activity EnsemblGenomesN/AIEA
GO:0004665GO-mf prephenate dehydrogenase (NADP+) activity JGI N/AIEA
GO:0008977GO-mf prephenate dehydrogenase (NAD+) activity EnsemblGenomesN/AIEA
GO:0008977GO-mf prephenate dehydrogenase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0048037GO-mf cofactor binding JGI N/AIEA
KOG2380 KOG Prephenate dehydrogenase (NADP+) JGI N/AIEA
PTHR11811Panther 6-PHOSPHOGLUCONATE DEHYDROGENASE JGI N/AIEA
PF02153PFAM Prephenate dehydrogenase JGI N/AIEA
PWY-3461SoyCyc9 L-tyrosine biosynthesis II Plant Metabolic Network ISS
PWY-3481SoyCyc9 superpathway of L-phenylalanine and L-tyrosine biosynthesis Plant Metabolic Network ISS
GN7V-45390SoyCyc9-rxn arogenate dehydrogenase (NADP+) Plant Metabolic Network ISS

Expression Patterns of Glyma.13g055500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g055500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g06340 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g055500
>Glyma.13g055500.1 sequence-type=CDS polypeptide=Glyma.13g055500.1.p locus=Glyma.13g055500 ID=Glyma.13g055500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGAGTGTTTCAAGTTTTCGGCCGCCGGCTGTGTATCCTACGTTGTTGCATTGTCCGAGACTCCACCATGTTAATGTTTCCTTATTCTGCTCCCTTTCAAATGGTGCCTCTTCTTCATGTAGATCCCTCGGTATACTACGTGCCATCTACCGTGAATCCGAAGTGCCGGCTCAACAGTTGCACCACGTCCAGAACCAGAAGCTAAAGATTGGCATCATAGGCTTCGGCAAATTTGGGCAGTTCCTGGCCCGAACCTTGGTTCGACAGGGCCACACCGTCTTGGCCCATTCCCGCTCCGACTACACTCACGTCGCACTCGAACTCGGCGTAACATTCTTCGAAAACCCCCACGACCTCTGCGACGAACGCCCCGAAGTCATTTTGCTCTGTTGCTCCATCCTTTCCGCCAGGCACGTGCTCCTCACTCTTCCTCTGCAGCGTTTGGAGCCTGGCACATTGTTCGTCGACGTCCTTTCTGTCAAGGAGTTTCCCAAAAAGCTCTTGCTCGACGTGCTTCCCTCCAATCTCGACATTCTCTGTTCGCACCCCATGTTCGGCCCCGATAGCGCCAGCTGCGGCTGGAGTGGCCGTCGCTTTATGTTCGACAAGGTTCGAATTCGGAACGAGGAGCGGTGCAACAAGTTCCTGGACGTGTTCAAGAGAGAAAGATGCGAAATGGTGGAGATGAGTTGTGAAGATCATGATAAGCTTTCGGCAAAGACGCAGTTCATAACACACACTATCGGTAGGGTTTTGGGGATGTTGGACTTGGAGAAGACTCGTATTTATACTAAGGGGTATGAGTCTCTGTTGAATTTAAAGGAAAACACTGCTAAGGACAGTTTTGATCTCTATTATGGTTTGTTTATTCTTAATAAGAATTCCCCGGACATGTTGGGAAGGTTGTGTTTTGCTTTCCAGGAGTTGAGGAAACAACTCTTGAAAGGTGTGCATGTTGTTGTCAGAGAACACTTGTTTGAGAATCCCGTAACCGCAAAGGTGCAAAATTTACAAGATACTGCATCATTTCATAGTGATGTCAGCGAATACAAGTCGAGCCTTTCAAGTGATTATTCTTATAACAACTTGAAGTTGAAGATTGCAATAGTTGGTTTCGGCAACTTTGGTCAGTTTCTCGCAAAAACTATTGTGCGTCAAGGTCATCAAGTGTTGGCATACTCTAGGTCAGACTACTCTACTGTAGCTAAGGAATTGGGTGTTACTTATTTTCGTAATGCTGATGATCTATGTGCACAACATCCCGAAGTAATTTTACTTTGCACATCAATCCTTTCCACAGAGGGTGTTCTTAAATCATTCCCTTGGCAGAAATTGGAGAGAAGTACCTTGTTTGTTGATGTACTTTCTGTCAAGGAATTTCATAGAAACTTGTTTCTTCAACATTTGCCACTTGATTTTGATGTGCTCTGTACTCATCCCATGTTTGGGCCACAAAGTGCAAAAGATGGATGGAGTGGTTTTCTTTTTGTTTTTGATAAGGTTAGAATAGGAACAGATGAAGCAAGAACATCACGATGTGATCTGTTTCTCAACATTTTTTCTAGTGAAGGGTGTCAACTTGTTGAAATGTCATGTGCTGAACATGATCGGCAAGCAGTTGGATCGCAATTTATCACTCACACTGTAGGAAGAATGTTAGAAAAGCTAGATTTTTTGGAGCCAACGAAAATTGACACAATAGGCTTTGAGTCTTTGTTGAATTTGATGGATAATACTGTTAGAGACAGTTTTGATCTCTACAATGGTTTGTTCTTGTTTAATGAAAACTCCAGGCAACAACTAGAAGAATTTCATCTAGCTTTTGAGTCATTGCAGAATCAACTTTTGGATCATGCGCTTGATAACTTAAAGCAAGTATTAATACTTGAAGAAGAATCCCATGATTAG
Predicted protein sequences of Glyma.13g055500
>Glyma.13g055500.1.p sequence-type=predicted peptide transcript=Glyma.13g055500.1 locus=Glyma.13g055500 ID=Glyma.13g055500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSVSSFRPPAVYPTLLHCPRLHHVNVSLFCSLSNGASSSCRSLGILRAIYRESEVPAQQLHHVQNQKLKIGIIGFGKFGQFLARTLVRQGHTVLAHSRSDYTHVALELGVTFFENPHDLCDERPEVILLCCSILSARHVLLTLPLQRLEPGTLFVDVLSVKEFPKKLLLDVLPSNLDILCSHPMFGPDSASCGWSGRRFMFDKVRIRNEERCNKFLDVFKRERCEMVEMSCEDHDKLSAKTQFITHTIGRVLGMLDLEKTRIYTKGYESLLNLKENTAKDSFDLYYGLFILNKNSPDMLGRLCFAFQELRKQLLKGVHVVVREHLFENPVTAKVQNLQDTASFHSDVSEYKSSLSSDYSYNNLKLKIAIVGFGNFGQFLAKTIVRQGHQVLAYSRSDYSTVAKELGVTYFRNADDLCAQHPEVILLCTSILSTEGVLKSFPWQKLERSTLFVDVLSVKEFHRNLFLQHLPLDFDVLCTHPMFGPQSAKDGWSGFLFVFDKVRIGTDEARTSRCDLFLNIFSSEGCQLVEMSCAEHDRQAVGSQFITHTVGRMLEKLDFLEPTKIDTIGFESLLNLMDNTVRDSFDLYNGLFLFNENSRQQLEEFHLAFESLQNQLLDHALDNLKQVLILEEESHD*






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