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Report for Sequence Feature Glyma.13g055200

Feature Type:gene_model
Chromosome:Gm13
Start:15229290
stop:15234025
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g055200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15610.2AT Proteasome component (PCI) domain protein JGI N/AIEA
GO:0001731GO-bp formation of translation preinitiation complex EnsemblGenomesN/AIEA
GO:0001732GO-bp formation of cytoplasmic translation initiation complex EnsemblGenomesN/AIEA
GO:0002183GO-bp cytoplasmic translational initiation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006446GO-bp regulation of translational initiation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005852GO-cc eukaryotic translation initiation factor 3 complex EnsemblGenomesN/AIEA
GO:0016282GO-cc eukaryotic 43S preinitiation complex EnsemblGenomesN/AIEA
GO:0033290GO-cc eukaryotic 48S preinitiation complex EnsemblGenomesN/AIEA
GO:0071541GO-cc eukaryotic translation initiation factor 3 complex, eIF3m EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG2753 KOG Uncharacterized conserved protein, contains PCI domain JGI N/AIEA
PTHR15350Panther COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 JGI N/AIEA
PTHR15350:SF2Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT M JGI N/AIEA
PF01399PFAM PCI domain JGI N/AIEA

Expression Patterns of Glyma.13g055200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g055200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g06410 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g055200
>Glyma.13g055200.1 sequence-type=CDS polypeptide=Glyma.13g055200.1.p locus=Glyma.13g055200 ID=Glyma.13g055200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGACGGTGGTGCCCACCTCCGAAGAAGACGCTGCTCTCTCTGTTGTCCGATTCGCCTCTGAACTCGCCTGGGCCGATGCCGGTCCCGAGGTTGCTGAGCCTCAAGTTAGTAGACTCTGCATGGAGGCTGAAGAGTTTATCGTTATGGGAAAATGGTTGGAACTAGCATCATTGATGATTACCTCTGCTGAATTGGTTTTCTCAAAGGTTTCTGAAACAGATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTGACAAAGACTGAGAATCCAGATGAAGTGATGGAGATTGTAAAAGTTATAACTGCAAAAATAATTCAGCAGCCAAACGAAAAGCCTGCTGTGCGATTGAAGACTTTGATCAATCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTCTACATGAAGGCATTGAATTTAGCTGTTAATGGGAAAGTCACAGAATACATTATACCTTCATTCAAAAAGATAGATAGCTTCTTGAAAGAGTGGAAAATTGGGATACCTGAACAGAGAGAGCTCTTTCTCACTATCTCTAATATTTTGAAGGAAAATAAAAGCATGTCAAAGGATGCTTTTAAGTTCCTGAGCAATTATCTGTCGACCTTTTCGGGAGAAGATGCACATGTTTTGAGTGAAGCCAAGGAGGAGGCCGCACGTGCAATTGTGGAATTTGTCAGAGCTCCTGACATATATCAGTGTGATTTGCTTGACTTGCCTGCTGTTGGGCAACTGGAGAAGGATGCCAAATATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTAGATGCATACTTAGAATATCAAGCTGCAAATTCCACCTTGTTGAAAAACTATGGCCTTGTGCCTGAAGAATGCATTTCCAAAATGAGGCTGATGTCATTGATGGATCTTACCTCTGATGGTTCTGGCCAAATTCCATATGAACTTATTAGGGACACACTTCAGATCAATGATGATGAAGTGGAACTATGGGTGGTTAGAGCAATAACTGCCAAGTTAATTGACTGTAAGATGGACCAAATGCATCAATCAGTAGTTGTTAGTCATCCTACTGATCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGCGACATGGAGAGGAAACATTGCAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAGGATGGGTCTCAGGCAGCCCAAGGTTTGGTAGTTAGGTGA
Predicted protein sequences of Glyma.13g055200
>Glyma.13g055200.1.p sequence-type=predicted peptide transcript=Glyma.13g055200.1 locus=Glyma.13g055200 ID=Glyma.13g055200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTVVPTSEEDAALSVVRFASELAWADAGPEVAEPQVSRLCMEAEEFIVMGKWLELASLMITSAELVFSKVSETDIESIFTIICNLVTKTENPDEVMEIVKVITAKIIQQPNEKPAVRLKTLINLYNLLETPYCQFYVYMKALNLAVNGKVTEYIIPSFKKIDSFLKEWKIGIPEQRELFLTISNILKENKSMSKDAFKFLSNYLSTFSGEDAHVLSEAKEEAARAIVEFVRAPDIYQCDLLDLPAVGQLEKDAKYALLYQLLKIFLTQRLDAYLEYQAANSTLLKNYGLVPEECISKMRLMSLMDLTSDGSGQIPYELIRDTLQINDDEVELWVVRAITAKLIDCKMDQMHQSVVVSHPTDRVFGQHQWQALRTKLATWRGNIANVISTIQANKITEDGSQAAQGLVVR*






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