SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g053800

Feature Type:gene_model
Chromosome:Gm13
Start:15110071
stop:15112808
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g053800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51550.1AT Malectin/receptor-like protein kinase family protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF418Panther JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA
PF11721PFAM Di-glucose binding within endoplasmic reticulum JGI N/AIEA

Proteins Associated with Glyma.13g053800
LocusGene SymbolProtein Name
CrRl,k1l,19 receptor-like protein kinase

Expression Patterns of Glyma.13g053800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g053800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g06530 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g053800
>Glyma.13g053800.1 sequence-type=CDS polypeptide=Glyma.13g053800.1.p locus=Glyma.13g053800 ID=Glyma.13g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGTTCCTCAGTATCACCTCCTTAACACTATTCTTCCTTCTTCTCTTTCTCTCCATAGAGCTCCAAGCGTACACCCCAGAAGACAACTTCACCATCAGTTGTGGCACCACCGGGATAGTCTTCGACGGCCAAAGGACATGGACGGGGGACGCAGACACAAAGTACTTATCTGGTGGTCAAGGCAGCACCGTTTTAACCCAAGCAGCAACACAAGATCCTTCTGTCAATCAAGTTCCCTACACCACAGCACGGTTATCCCCTTCTCAGTTCAATTACTCCTTCCCCGTTTCTGCGGGCCCCAAATTCGTTCGCCTCTTCTTCTACCCGGCTGATTACCCTTCCTTTCCCCGCACTGATGCCTCTTTCTCCGTTCAATCTAACGGATTCACCTTCTTAAAAGGTTTCAACGCCTCTCTAAACGCTGACGCGGAAGCCACCAAAACCATCTTCAGGGAATATGTGGTCAACGTCAACGACGGTGAGACTCTCATCCTCAGCTTCACTCCCTCGCAACCAAACTCCTACGCTTTCATCAATGGAATCGAGGTGCTTTCCATGCCAAGTGATTTGTATTACACGTCAGCAACTGACTCAACAGGATTCAAGTTCTTGGGAAGTACCACGCTGTACAGCGTAGAAACCAGATTTGCGCTGCAGGCGGAGTATAGAATCAAAATGGGAGGGCAAGAAATATCACCACTAAACGACACCGGTTTGTTCAGGAAATGGGCCGATGACGAAGAAGATTATTTAATCAAACAAAATCCACAGAATAATGATCTTTCAAGCAACACGGATGGTAAGATGAACATAACCGTGAATCCTGATTACGTGGCACCCAAGGAACTCTACAGAACAGCGCGTAACATGGGCACAAACGCCACTCTGAACAAAATCAGCAACCTGACTTGGGAGTTCCCGGTTGATTCTGGCTTCACTTACGTTCTCAGGCTTCACTTTTGCGAGCTTGACCCCAATATTAATAAAGATGGTGACAGGGTGTTCTTCATTTACATAGCGAGCCAGTTGGCTGAGAACCACGCTGATGTTATGCAATGGAGCCACAATCAGAAAGGTCTCGCTGTGCAGAGAAACTATGCCGTTTTAATTCCGAAGGACAATACTCAGAAAAAGGTTAATCTCTCGCTTCAGATGCATCCTTATGCAACTAATGATGAAACGACATACAGCGACGCGTTCTTGAACGGTCTCGAGATCTTCAAAATCAGTGAGGCTGGGTCAAACAACCTTGCCGGACCTAACCCGGACCCGGTTCAGACTCCACACAACAACATACCCGCCCCAAAGGGAAACCGCAGCAGCAAAAGCGGAACGTCGATAATCGGCATCGTGGCAGGTGTGGTATCCGGCGTCGTTTTGATCTCACTCATCATCCTTTTCCTCATCGTCTTCTTCCGACGCAAGACAATCACTACGCCCAAGGACTACAACAAGTCCAAGTCCTCCGCGACCTCCAAGTGGGGCCCACTCTCCTTCACAACGACCAAGTCAACCACCACCACGAAGTCCTCCCTCCCCTCCGAACTCTGTCGTAACTTTTCCCTCGCCGAGATCGAAGCCGCCACCAACAACTTCGACGATGTTCTCATCATTGGCGTCGGGGGATTCGGCCACGTGTACAAGGGCTACATCGACGGCGGTTTCACCCCAGTCGCCATCAAGCGCCTCAAACCGGATTCACAGCAGGGTGCAAATGAATTCACGAATGAGATCGAGATGCTCTCACAGCTACGCCACCTTCATCTCGTGTCCCTCATTGGGTACTGCAACGAGAACTACGAAATGATCCTCGTCTACGATTTCATGGCACGTGGCACCCTCCGGCAACATCTCTACAACTCTGATAACCCTCCTGTCTCGTGGAAGCAGCGCTTGCAAATTTGCATTGGTGCCGCACGTGGGCTGCATTATCTCCACACAGGCGGGAAGCACACAATCATCCACCGTGACGTGAAAACCACCAACATACTGTTGGATGACAAGTGGGTGGCCAAGATTTCCGACTTTGGGCTATCCAGAATTGGGCCCACGAGCATTGACAAATCTCATTGCTCTTTGAGATATTGTGCGCTCGGCCACCTCTAA
Predicted protein sequences of Glyma.13g053800
>Glyma.13g053800.1.p sequence-type=predicted peptide transcript=Glyma.13g053800.1 locus=Glyma.13g053800 ID=Glyma.13g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTFLSITSLTLFFLLLFLSIELQAYTPEDNFTISCGTTGIVFDGQRTWTGDADTKYLSGGQGSTVLTQAATQDPSVNQVPYTTARLSPSQFNYSFPVSAGPKFVRLFFYPADYPSFPRTDASFSVQSNGFTFLKGFNASLNADAEATKTIFREYVVNVNDGETLILSFTPSQPNSYAFINGIEVLSMPSDLYYTSATDSTGFKFLGSTTLYSVETRFALQAEYRIKMGGQEISPLNDTGLFRKWADDEEDYLIKQNPQNNDLSSNTDGKMNITVNPDYVAPKELYRTARNMGTNATLNKISNLTWEFPVDSGFTYVLRLHFCELDPNINKDGDRVFFIYIASQLAENHADVMQWSHNQKGLAVQRNYAVLIPKDNTQKKVNLSLQMHPYATNDETTYSDAFLNGLEIFKISEAGSNNLAGPNPDPVQTPHNNIPAPKGNRSSKSGTSIIGIVAGVVSGVVLISLIILFLIVFFRRKTITTPKDYNKSKSSATSKWGPLSFTTTKSTTTTKSSLPSELCRNFSLAEIEAATNNFDDVLIIGVGGFGHVYKGYIDGGFTPVAIKRLKPDSQQGANEFTNEIEMLSQLRHLHLVSLIGYCNENYEMILVYDFMARGTLRQHLYNSDNPPVSWKQRLQICIGAARGLHYLHTGGKHTIIHRDVKTTNILLDDKWVAKISDFGLSRIGPTSIDKSHCSLRYCALGHL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo