SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g053300

Feature Type:gene_model
Chromosome:Gm13
Start:15064460
stop:15069264
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g053300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60920.1AT COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family JGI N/AIEA
GO:0010215GO-bp cellulose microfibril organization EnsemblGenomesN/AIEA
GO:0010215GO-bp cellulose microfibril organization JGI N/AIEA
GO:0016049GO-bp cell growth EnsemblGenomesN/AIEA
GO:0016049GO-bp cell growth JGI N/AIEA
GO:0031225GO-cc anchored component of membrane EnsemblGenomesN/AIEA
GO:0031225GO-cc anchored component of membrane JGI N/AIEA
PF04833PFAM COBRA-like protein JGI N/AIEA

Proteins Associated with Glyma.13g053300
LocusGene SymbolProtein Name
COBL16 Regulates cell wall expansion and cellulose depostion

Expression Patterns of Glyma.13g053300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g053300
ParalogEvidenceComments
Glyma.19g033500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g053300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g06660 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g053300
>Glyma.13g053300.2 sequence-type=transcript locus=Glyma.13g053300 ID=Glyma.13g053300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACAGTCAGCAGCTTCCGCCGCGTCACACACAGACTCTTTTTCTTCACTCTGTTCTCTCTCTCTATCACGCACACAGACACAACAACATCAACAATTACGAATCCCCTAAACATTCCCTTTGTTCCAAAGAAAAATGCTTTTCCGTTTCAGCTTCCCCTTCACGATCCGATTCTTCTTCATACCCCCTCCATGCATTCTGCTTTTCGTTCTCTTCTCTTTCACGTGCTTCAATTCCACAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAACAATATCGTCATATCTCAGCGCCTGGGTGGTCATTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATATAAGGCAAACATCCCACATTGCTGTAAAAAGAACCCTATAGTTGTTGATTTACTTCCCGGAACACCTTACAACCAACAAATTTCAAACTGCTGCAAAGGTGGTGTACTCAGCTCGTGGGCACAGGACCAATCCAAGGCGGTTGCAGCATTTCAAGTCAGTGTAGGTAGTGCCAGTACCACTAACAAAACTGTCAAAGTGCCAAAAGATTTCACACTGAAAGCGCCAGGACCCGGTTACACGTGTGGGCCGGCAACAATTGTGAAACCAACTCAATTTTTACAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTTGCTCAGAGAACACCCAGTTGCTGTGTCTCGCTCTCATCTTTCTATAACAATACAGTTGTACCCTGCACTACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGAGAATGTGTAGATCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAAGAGTAGTATCACACCTTTGGTTCGATGCACTCGTCATATGTGCCCAATCCGAGTTCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTGTTACTAATTTTAATTACGGGATGAATTATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAATGATACAGCAATGCTTTGGGGACTTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTCTTGGTAATGTACAATCAGAGCTACTATTCAGAAAGGATAAATCAACCTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGCGACGTTTGTGTGATGTCGCCACCTGATGCTTATCCATGGTTACCTAATGCGGGTTCCAGGCAAGTGGTTTCCCTGCTTGCTTTGGTGATGTCCTCTTTGGTAGCCTTGGTATTATATGCAGATACTTAAAGTTCCTATTCATGCCACACTCATCAAAAATCTTAAAAGTGTGACAAGTTTTGACTCAATTTTGGGATACCAATTTGGAATTTGAACCAAGCCAGGGTATGACATCCAGTGACAATTCAAAGGGTAGCTCAGTTGTCCTATGATTTGTTTGCAAGTTTCAGCATATGGGGCGATTGAATTTGCTACTATATTGTTATTTCTGACTGTTATAATGTAATGATGTATTTATTGGTTTTAGATCCATAGTTACAGTTGGCGCTGTAAGTATTAGAAATATATAAAGGTACACAATGATGTAATTCATAAACGAATTTCTGTATTTGACGTGAGAATCGTTT
Coding sequences of Glyma.13g053300
>Glyma.13g053300.1 sequence-type=CDS polypeptide=Glyma.13g053300.1.p locus=Glyma.13g053300 ID=Glyma.13g053300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTTTCCGTTTCAGCTTCCCCTTCACGATCCGATTCTTCTTCATACCCCCTCCATGCATTCTGCTTTTCGTTCTCTTCTCTTTCACGTGCTTCAATTCCACAGAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAACAATATCGTCATATCTCAGCGCCTGGGTGGTCATTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATATAAGGCAAACATCCCACATTGCTGTAAAAAGAACCCTATAGTTGTTGATTTACTTCCCGGAACACCTTACAACCAACAAATTTCAAACTGCTGCAAAGGTGGTGTACTCAGCTCGTGGGCACAGGACCAATCCAAGGCGGTTGCAGCATTTCAAGTCAGTGTAGGTAGTGCCAGTACCACTAACAAAACTGTCAAAGTGCCAAAAGATTTCACACTGAAAGCGCCAGGACCCGGTTACACGTGTGGGCCGGCAACAATTGTGAAACCAACTCAATTTTTACAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTTGCTCAGAGAACACCCAGTTGCTGTGTCTCGCTCTCATCTTTCTATAACAATACAGTTGTACCCTGCACTACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGAGAATGTGTAGATCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAAGAGTAGTATCACACCTTTGGTTCGATGCACTCGTCATATGTGCCCAATCCGAGTTCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTGTTACTAATTTTAATTACGGGATGAATTATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAATGATACAGCAATGCTTTGGGGACTTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTCTTGGTAATGTACAATCAGAGCTACTATTCAGAAAGGATAAATCAACCTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGCGACGTTTGTGTGATGTCGCCACCTGATGCTTATCCATGGTTACCTAATGCGGGTTCCAGGCAAGTGGTTTCCCTGCTTGCTTTGGTGATGTCCTCTTTGGTAGCCTTGGTATTATATGCAGATACTTAA

>Glyma.13g053300.2 sequence-type=CDS polypeptide=Glyma.13g053300.2.p locus=Glyma.13g053300 ID=Glyma.13g053300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTTTCCGTTTCAGCTTCCCCTTCACGATCCGATTCTTCTTCATACCCCCTCCATGCATTCTGCTTTTCGTTCTCTTCTCTTTCACGTGCTTCAATTCCACAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAACAATATCGTCATATCTCAGCGCCTGGGTGGTCATTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATATAAGGCAAACATCCCACATTGCTGTAAAAAGAACCCTATAGTTGTTGATTTACTTCCCGGAACACCTTACAACCAACAAATTTCAAACTGCTGCAAAGGTGGTGTACTCAGCTCGTGGGCACAGGACCAATCCAAGGCGGTTGCAGCATTTCAAGTCAGTGTAGGTAGTGCCAGTACCACTAACAAAACTGTCAAAGTGCCAAAAGATTTCACACTGAAAGCGCCAGGACCCGGTTACACGTGTGGGCCGGCAACAATTGTGAAACCAACTCAATTTTTACAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTTGCTCAGAGAACACCCAGTTGCTGTGTCTCGCTCTCATCTTTCTATAACAATACAGTTGTACCCTGCACTACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGAGAATGTGTAGATCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAAGAGTAGTATCACACCTTTGGTTCGATGCACTCGTCATATGTGCCCAATCCGAGTTCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTGTTACTAATTTTAATTACGGGATGAATTATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAATGATACAGCAATGCTTTGGGGACTTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTCTTGGTAATGTACAATCAGAGCTACTATTCAGAAAGGATAAATCAACCTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGCGACGTTTGTGTGATGTCGCCACCTGATGCTTATCCATGGTTACCTAATGCGGGTTCCAGGCAAGTGGTTTCCCTGCTTGCTTTGGTGATGTCCTCTTTGGTAGCCTTGGTATTATATGCAGATACTTAA
Predicted protein sequences of Glyma.13g053300
>Glyma.13g053300.1.p sequence-type=predicted peptide transcript=Glyma.13g053300.1 locus=Glyma.13g053300 ID=Glyma.13g053300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFRFSFPFTIRFFFIPPPCILLFVLFSFTCFNSTEAYDPLDPNGNITIKWDIISWTPDGYVAVVTMYNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKYKANIPHCCKKNPIVVDLLPGTPYNQQISNCCKGGVLSSWAQDQSKAVAAFQVSVGSASTTNKTVKVPKDFTLKAPGPGYTCGPATIVKPTQFLQPDKRRVTQALMTWNVTCTYSQFLAQRTPSCCVSLSSFYNNTVVPCTTCACGCQGNSSQSGECVDPDSPHLQSVVSNAGPGKSSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTVTNFNYGMNYSDWNLVVQHPNFDNLTQLFSFNYKAITPYGSINDTAMLWGLKFYNDFLMQAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDVCVMSPPDAYPWLPNAGSRQVVSLLALVMSSLVALVLYADT*

>Glyma.13g053300.2.p sequence-type=predicted peptide transcript=Glyma.13g053300.2 locus=Glyma.13g053300 ID=Glyma.13g053300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFRFSFPFTIRFFFIPPPCILLFVLFSFTCFNSTAYDPLDPNGNITIKWDIISWTPDGYVAVVTMYNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKYKANIPHCCKKNPIVVDLLPGTPYNQQISNCCKGGVLSSWAQDQSKAVAAFQVSVGSASTTNKTVKVPKDFTLKAPGPGYTCGPATIVKPTQFLQPDKRRVTQALMTWNVTCTYSQFLAQRTPSCCVSLSSFYNNTVVPCTTCACGCQGNSSQSGECVDPDSPHLQSVVSNAGPGKSSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTVTNFNYGMNYSDWNLVVQHPNFDNLTQLFSFNYKAITPYGSINDTAMLWGLKFYNDFLMQAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDVCVMSPPDAYPWLPNAGSRQVVSLLALVMSSLVALVLYADT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo