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Report for Sequence Feature Glyma.13g050800

Feature Type:gene_model
Chromosome:Gm13
Start:14719604
stop:14721060
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g050800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02340.1AT RING/U-box superfamily protein JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
PTHR22763Panther RING ZINC FINGER PROTEIN JGI N/AIEA

Expression Patterns of Glyma.13g050800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g050800
ParalogEvidenceComments
Glyma.19g037800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g050800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g06960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g050800
>Glyma.13g050800.1 sequence-type=CDS polypeptide=Glyma.13g050800.1.p locus=Glyma.13g050800 ID=Glyma.13g050800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAATCATCATCGTTCCTCCAATCCCTTCTCATCTACTCACTCTGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCGCTCTCGCCTCTGCTCCTGCGACGACGACACTGACATAAACCCCTTCTCTGACGTCGTTTGCGACCTCCATCGCACGGAGCATATGTTAGGGTTAGGGTTAGGGTTTGGCGTTGAAATTGATCCCGAAAGCCAAACAAATGATCGTGATAATCATCGTGGTGATAGGGTTTTGGAAGCTGATAGAGTTTTCAATTTCACGGTGGGGGATGGTTCGGGTGGGCTTAGGGTTGTAGGGTTTGGCTCGGAATCCGAATCGAGTAGCGAGGAGGGTGGGATTCGTGATGGTGGCGGGTTTGATGATTTCGATGTTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAACGAGGGGTTTGAGTGGGAGGAGGTGGAGGAGAGGGTGAATGAGAGAGAGGATTTGGGTTTGGTGGTTGATGAGGTTGAAATTGAAAGTGATGATGGTGATGGGAATTCGGTGGCGTCGGGTTTTACAAATGCCGTTGAGGAGGAGGATGCCGGGGAAGAGGCACTGAGGTACCTCGAATGGGAGATCCTCTTGGCGGTTAACAATTTGGAGAGGAATGTGAATGATGTGTTGGAGCACGAGGGCAATGCTGTTGGTGGTGCTGATTTGTTAACAATTCAGGATGGTTATGTGTACGCAGCCGAGTATGATGTTTTGTTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGGAGCCCTCCGGCCTCGAAGAGTGTTGTGGAGAGTCTCCCGTTGGTGGAGTTGTCCAAGGAGGAGTTGTTGCAGGGGAAGAACGTGGCATGTGCCATTTGCAAGGATGAGGTTTTGTTGGAGGAGAAGGTGAGAAGGCTGCCTTGCTCCCATTGTTATCATGGGGACTGCATTTTGCCGTGGTTGGGCATTCGCAACACGTGCCCAGTTTGCCGGTTTGAGCTACCCACTGATGATCCGGACTATGAGCAGGGGAAGGTCCAGAGGGCAGCACATGGTCTGTTGGAGCTTGCGGCAGCACGGATGCAATTTTGA
Predicted protein sequences of Glyma.13g050800
>Glyma.13g050800.1.p sequence-type=predicted peptide transcript=Glyma.13g050800.1 locus=Glyma.13g050800 ID=Glyma.13g050800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNHHRSSNPFSSTHSDSDSDSVSCFVTDLFETRSRLCSCDDDTDINPFSDVVCDLHRTEHMLGLGLGFGVEIDPESQTNDRDNHRGDRVLEADRVFNFTVGDGSGGLRVVGFGSESESSSEEGGIRDGGGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIESDDGDGNSVASGFTNAVEEEDAGEEALRYLEWEILLAVNNLERNVNDVLEHEGNAVGGADLLTIQDGYVYAAEYDVLFGQFLENESALKGSPPASKSVVESLPLVELSKEELLQGKNVACAICKDEVLLEEKVRRLPCSHCYHGDCILPWLGIRNTCPVCRFELPTDDPDYEQGKVQRAAHGLLELAAARMQF*






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