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Report for Sequence Feature Glyma.13g050600

Feature Type:gene_model
Chromosome:Gm13
Start:14693012
stop:14696222
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g050600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02350.1AT galacturonosyltransferase 9 JGI N/AIEA
GO:0045489GO-bp pectin biosynthetic process EnsemblGenomesN/AIEA
GO:0071555GO-bp cell wall organization EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups JGI N/AIEA
GO:0047262GO-mf polygalacturonate 4-alpha-galacturonosyltransferase activity EnsemblGenomesN/AIEA
PTHR13778Panther GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN JGI N/AIEA
PTHR13778:SF3Panther GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1 JGI N/AIEA
PF01501PFAM Glycosyl transferase family 8 JGI N/AIEA
PWY-1061SoyCyc9 homogalacturonan biosynthesis Plant Metabolic Network ISS
GN7V-54980SoyCyc9-rxn polygalacturonate 4-α-galacturonosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g050600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g050600
ParalogEvidenceComments
Glyma.19g038000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g050600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g06990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g050600
>Glyma.13g050600.1 sequence-type=CDS polypeptide=Glyma.13g050600.1.p locus=Glyma.13g050600 ID=Glyma.13g050600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTGCCACGAGAGGAGCCAGGGGTGGATCTAGTTTTCGTAGTTTGTTCTCGTTTCGGATCTTCATCTCTGCCATATTTTCTCTTCTCTTCGTTGCCACCCTTTCGGTCCTCTTCACCACCAACCCCTCCACATCGAACGATGACTCTGATCTTCCCACGACTGGTAATGCATACGTGCATAGAACCTTTTTGGCATTGAAATCTGACCCTCTTAGGACCCGAATGGATTTGATACACCAACAAGCTAAAGATCACATTGCACTAGTGAATGCCTATGGTGCTTATGCTAGGAAGCTCAAGCTTGACATTTCTAAGCAATTGAAGATGTTTGATGAGTTGGCACACAATTTTTCGGATATTGTGTTGAAACCAACCTATAAGGCATCACTGTTTGATTCCGATGGTCCAATTGATGAGGATGTGCTGAGGCAGTTTGAGAAGGAGGTTAAGGATAGAGTGAAGATTGCACGGATGATCATTGTTGAGGCCAAAGAGAATTATGATAATCAGTTGAAGATCCAGAAGTTGAAGGACACGATATTTGCTGTTCATGAGTCACTTGCAAAGGCAAAGAAGAATGGGGCGTTGGCAAGCTTGATTTCGGCCAGATCAATCCCCAAGAGCTTGCATTGTTTGGCAATGAGGCTGATGGGTGAGAAGATTTCAAATCCTGAGAAATATAGAGATGAGGAGCCCAAGCTGGAGTTTGAAGATCCCACTTTGTATCATTATGCTATATTCTCAGAAAATGTCATAGCTGTGTCTGTGGTGGTGAGATCTCTGGTGAAGAATGCAGTGGAACCATGGAAGCATGTTTTCCATGATGTTACAAACAGGATGAATGTTGGGGCAATGAAGGTTTGGTTTAAGATGAGGCCCATTGAAGGGGGTGCATTTTTAGAGGTGAAATCGGTGGAAGAATTCACATTCTTAAATTCATCATATGTCCCGATCTTGAGGCAACTTGAGTCAGCCAAAATGAAGCAGCGGTACTTGGAGAATCAAGCTGATAATGCCACAAATGATGCAAACATGAAAAATGCCAAGTCCCTGTCCATGTTGGATCACCTTCGATTTTATTTGCCAGAGATGTACCCTAAATTGTATAAGATCTTACTTTTGGATGATGATGTTGTGGTTCAAAAAGACTTGACAGGTTTGTGGAAAATTGATTTGGATGGGAAGGTGAATGGTGCTGTTGAGATCTGTTTTGGCTCTTTCCACCGATATGCCCAGTACTTGAATTTCTCTCATCCTTTAATCAAGGAGAGCTTCAATCCAAAAGCTTGTGCTTGGGCCTATGGCATGAATATATTTAATCTTGATGCTTGGAGGCATGAAAAGTGTACAGATAATTATCACTATTGGCAGAACTTGAATGAAGACCAAACTTTGTGGACAGCAGGGACCCTGTCACCTGGTTTGATCACCTTCTACTCCACAACCAAGACACTGGACAAATCCTGGCACGTGCTTGGGCTAGGATACAATCCAAGCATTAGCATGGATGAGATCAGCAATGCTGCAGTCATTCATTACAATGGAAACATGAAACCTTGGCTTGATATTGCTTTGAACCAATACAAAAATCTTTGGACCAAATACGTGGACAACAATATGGAGTTTGTGCAGATGTGCAATTTTGGCCTATAG
Predicted protein sequences of Glyma.13g050600
>Glyma.13g050600.1.p sequence-type=predicted peptide transcript=Glyma.13g050600.1 locus=Glyma.13g050600 ID=Glyma.13g050600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVATRGARGGSSFRSLFSFRIFISAIFSLLFVATLSVLFTTNPSTSNDDSDLPTTGNAYVHRTFLALKSDPLRTRMDLIHQQAKDHIALVNAYGAYARKLKLDISKQLKMFDELAHNFSDIVLKPTYKASLFDSDGPIDEDVLRQFEKEVKDRVKIARMIIVEAKENYDNQLKIQKLKDTIFAVHESLAKAKKNGALASLISARSIPKSLHCLAMRLMGEKISNPEKYRDEEPKLEFEDPTLYHYAIFSENVIAVSVVVRSLVKNAVEPWKHVFHDVTNRMNVGAMKVWFKMRPIEGGAFLEVKSVEEFTFLNSSYVPILRQLESAKMKQRYLENQADNATNDANMKNAKSLSMLDHLRFYLPEMYPKLYKILLLDDDVVVQKDLTGLWKIDLDGKVNGAVEICFGSFHRYAQYLNFSHPLIKESFNPKACAWAYGMNIFNLDAWRHEKCTDNYHYWQNLNEDQTLWTAGTLSPGLITFYSTTKTLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIALNQYKNLWTKYVDNNMEFVQMCNFGL*






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