SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g040200

Feature Type:gene_model
Chromosome:Gm13
Start:12579481
stop:12581070
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g040200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43350.1AT phosphate transporter 1;1 JGI N/AIEA
GO:0006817GO-bp phosphate ion transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0005887GO-cc integral component of plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0005315GO-mf inorganic phosphate transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity JGI N/AIEA
KOG0252 KOG Inorganic phosphate transporter JGI N/AIEA
PTHR24064Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24064:SF16Panther JGI N/AIEA
PF00083PFAM Sugar (and other) transporter JGI N/AIEA

Proteins Associated with Glyma.13g040200
LocusGene SymbolProtein Name
PHT1-13 inorganic phosphate transporter 1-13

Expression Patterns of Glyma.13g040200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g040200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g08720 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g040200
>Glyma.13g040200.1 sequence-type=CDS polypeptide=Glyma.13g040200.1.p locus=Glyma.13g040200 ID=Glyma.13g040200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTGGAAGTGCTTGAAGCGCTCGATTCAGCGCGCACGCAATGGTACCACGTGACGGCCATTGTTATAGCGGGCATGGGCTTCTTCACTGATGCCTATGACCTTTTCTGTATCTCAACGGTTTCGAAACTTTTGGGACGGTTGTACTATTTTGACCCGAGCACCCCAACGGTGCCTGGAAAGCTCCCGCTGAACGTGAACAACATGGTCACCGGTGTCGCACTCGTTGGGACCCTCAGTGGCCAGCTCGTCTTTGGCTGGCTCGGAGACAAGCTCGGCCGGAAAAAAGTTTACGGTATCACCCTGATCCTCATGGTGTTCTGCGCCATTTGCTCTGGACTATCGTTCGGGGCAACAGCGAAGTCTGTCATGGGGACGCTCTGCTTCTTCCGCTTCTGGCTCGGCTTCGGCATCGGCGGAGACTACCCGCTCTCCGCCACCATCATGTCGGAGTACGCCAACAAGCGGACACGCGGCGCATTTATAGCAGCCGTGTTCGCCATGCAAGGTGTGGGGATCATTTTCGCGGGTTTAGTCTCCATGGCCCTCTCAGGAATCTTTAAATACTACTACCCTGCCCCAGCGTACATCGATAATCCTGTCTTGTCCACACAACCCGAGGGTGACCTTTTGTGGCGGCTTGTTCTCATGATTGGATCTGTCCCTGCGATGTTGACTTACTATTGGCGAATGAAAATGCCGGAGACGGGGCGTTACACCGCCATCATCGAAGGAAACGTGAAGCAAGCCGCCGCCGACATGGCGAAAGTCTTGGACATAGAGATCCAGGCTGAGCAAGATAAGTTGGCGGAATTCAATGCTAACAATAACTACCCACTCTGGTCAAACGAGTTCTTCAAGCGACATGGACGCCACTTGATAGGAACAATGAGTTCATGGTTTTTGTTAGATATTGCGTTCTACAGCCAAAACTTAACGCAGAAGGATATTTTCCCTGCGGTTGGGCTCATACACAAAGACTTTGAAATGGACGCTATTAGGGAAGTGTTCGAGACGTCACGTGCCATGTTCGTGATCGCGTTGCTGGGAACATTCCCAGGGTATTGGTTCACTGTTTTCTTCATTGAGAAGATTGGAAGGTACAAGATCCAACTTATTGGGTTCTTCATGATGTCGTTCTTCATGTTCATCATTGGGGTGAAGTACGATTATCTCAAGAACGAGGGCAAAGGCTACTTTGCGCTCTTATACGGATTAACGTTCTTTTTTGCTAACTTTGGACCCAATAGCACGACGTTCGTGCTGCCCGCCGAGCTTTTCCCGACGCGCGTGAGAAGCACGTGTCACGCCCTTAGCGCTGCGGCGGGAAAAGCCGGGGCCCTCGTGGGGACATTCGGAATACAAAGTTTGACTGTGGGTGGTCAATCATACAAGATTAAAAAGGTGATGATTATTCTGGCGGTGACAAACTTGTTAGGGTTCTTCTCTTCGTTTTTGGTTACTGAAACGAAGGGACGGTCCTTGGAAGAGATTTCTGGGGAGGATGGGAGAGAGAGTGAACTCACGCCAACGCCCAATAATAGGATTCAGGGTAGGATTCAGGGTTCAAGGACTGAGACAATGTGA
Predicted protein sequences of Glyma.13g040200
>Glyma.13g040200.1.p sequence-type=predicted peptide transcript=Glyma.13g040200.1 locus=Glyma.13g040200 ID=Glyma.13g040200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALEVLEALDSARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYFDPSTPTVPGKLPLNVNNMVTGVALVGTLSGQLVFGWLGDKLGRKKVYGITLILMVFCAICSGLSFGATAKSVMGTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGVGIIFAGLVSMALSGIFKYYYPAPAYIDNPVLSTQPEGDLLWRLVLMIGSVPAMLTYYWRMKMPETGRYTAIIEGNVKQAAADMAKVLDIEIQAEQDKLAEFNANNNYPLWSNEFFKRHGRHLIGTMSSWFLLDIAFYSQNLTQKDIFPAVGLIHKDFEMDAIREVFETSRAMFVIALLGTFPGYWFTVFFIEKIGRYKIQLIGFFMMSFFMFIIGVKYDYLKNEGKGYFALLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGALVGTFGIQSLTVGGQSYKIKKVMIILAVTNLLGFFSSFLVTETKGRSLEEISGEDGRESELTPTPNNRIQGRIQGSRTETM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo