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Report for Sequence Feature Glyma.13g038600

Feature Type:gene_model
Chromosome:Gm13
Start:11956631
stop:11959361
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g038600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G43800.1AT Plant stearoyl-acyl-carrier-protein desaturase family protein JGI N/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0006631GO-bp fatty acid metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0045300GO-mf acyl-[acyl-carrier-protein] desaturase activity EnsemblGenomesN/AIEA
GO:0045300GO-mf acyl-[acyl-carrier-protein] desaturase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF03405PFAM Fatty acid desaturase JGI N/AIEA
PWY-5147SoyCyc9 oleate biosynthesis I (plants) Plant Metabolic Network ISS
PWY-5156SoyCyc9 superpathway of fatty acid biosynthesis II (plant) Plant Metabolic Network ISS
GN7V-42795SoyCyc9-rxn stearoyl-[acyl-carrier-protein] 9-desaturase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g038600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g038600 not represented in the dataset
Glyma.13g038600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g038600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g08986 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g038600
>Glyma.13g038600.1 sequence-type=CDS polypeptide=Glyma.13g038600.1.p locus=Glyma.13g038600 ID=Glyma.13g038600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGATACAAACCCTCCCACTTGCATCCCCGGCTCCAAGAATCACCCGGCACCACTTTCCGCGGCCACCGAAATGCGCAGTTACCGCCACACCGCCGCCATTGAAGGAGAGGAGAAACCACTCAATGCCGCCGGAAAAGATAGAGATTTTCAAGTCCCTGGAGGGATGGGCCTCACAGCGGGTCTTACCGCTGCTGAAGCCCGTGGAGCAATGCTGGCAGCCCCAGAAGTTCCTCCCTGACTCGACCCTACCCTTCGATGAGTTCATCGAAGCGGTGAGGTCGCTTCGCCACCGCACCAAGGAGCTATCTGACGAGTACTTCTTAGTGCTGGTGGGTGACATGGTCACGGAAGAAGCGCTTCCCACTTACCAGACCATAATGAGTGGCCTGGATGGGGTGGGAGACAAGTGCGGATCAAACCCAAGCCCGTGGGCCGTGTGGACCCGGGCCTGGTCCGCGGAGGAAAACAGACACGGGGATTTGCTCAGAACTTATTTGTATCTTTCTGGTCGTGTTGACATGAAGATGATCGAGAGGACTATCCACAACCTCATAGCAGCTGGCATGGACCCTGGTTTCGAGAACAACCCGTATTTGGGGTTTGTGTATACTTCATTCCAAGAGCGAGCGACGTTCGTGTCCCACGGCAACACAGCTCGGCTTGCGAAGGAGGGTGGTGATCCAGTGCTGGCGTGCATATGCGGGACCATCGCAGCGGACGAGAAGCGGCACGAGAATGCGTACTCAAGAATCGTCGAGAAGCTTCTAGAAGTGGATCCCACCGGGGCAATGTTGGCCATAGGAACCACGATGGAGAAGAAGATCACGATGCCGGCGCACCTTATGTACGATGGGGAGGACCCCAGGCTATTCGAGCACTACTCCACGGTGGCGCAGCGAATGGGCGTTTACACGGCCAAAGACTACGCGGACATCTTGGAGTTTCTGATCGGACGGTGGAGATTGGAGAAGCTGGAAGGTTTGACGGCTGAGGGAAAGAGGGCGCAGGATTTTGTGTGTGGGTTAGCACCGAGGATTAGGAAGTTGCAAGAGCGTGCTGATGAGCGAGCGCGTAAGATGAAGCCTCATGGAGTTAAGTTTAGCTGGATCTTCAATAAAGAGCTGCATTTGTGA
Predicted protein sequences of Glyma.13g038600
>Glyma.13g038600.1.p sequence-type=predicted peptide transcript=Glyma.13g038600.1 locus=Glyma.13g038600 ID=Glyma.13g038600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQIQTLPLASPAPRITRHHFPRPPKCAVTATPPPLKERRNHSMPPEKIEIFKSLEGWASQRVLPLLKPVEQCWQPQKFLPDSTLPFDEFIEAVRSLRHRTKELSDEYFLVLVGDMVTEEALPTYQTIMSGLDGVGDKCGSNPSPWAVWTRAWSAEENRHGDLLRTYLYLSGRVDMKMIERTIHNLIAAGMDPGFENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLACICGTIAADEKRHENAYSRIVEKLLEVDPTGAMLAIGTTMEKKITMPAHLMYDGEDPRLFEHYSTVAQRMGVYTAKDYADILEFLIGRWRLEKLEGLTAEGKRAQDFVCGLAPRIRKLQERADERARKMKPHGVKFSWIFNKELHL*






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