SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g035600

Feature Type:gene_model
Chromosome:Gm13
Start:11001263
stop:11004901
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g035600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07200.1AT gibberellin 20-oxidase 3 JGI N/AIEA
AT5G51810.1AT gibberellin 20 oxidase 2 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016706GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI N/AIEA
PTHR10209Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN JGI N/AIEA
PTHR10209:SF55Panther JGI N/AIEA
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI N/AIEA
PWY-5032SoyCyc9 ent-kaurene biosynthesis I Plant Metabolic Network ISS
PWY-5053SoyCyc9 superpathway of gibberellin GA12 biosynthesis Plant Metabolic Network ISS
GN7V-58207SoyCyc9-rxn ent-kaurene synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.13g035600
LocusGene SymbolProtein Name
GA20OX5 gibberellin 20 oxidase 5

Expression Patterns of Glyma.13g035600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g035600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g09460 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g035600
>Glyma.13g035600.2 sequence-type=transcript locus=Glyma.13g035600 ID=Glyma.13g035600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACAAATACATGCCACTCCTTGGCCTATGTGCTCTATCTCCACCAAGCTTGTGAAAACTAAGTCCCTTCTTTACTTATTACACCTACAATTTTCATTTCACACACCAACGTGCCATCATGGATTCAGGTTTCTACTTGGTGTCATCACTGAACCACCAAGAAGTAGTCCAAAGCCGTTTCTTCGATCCCTCTTGGCTACAAATGCAACCCCACGTTCCCATGAGCTTTGTTTGGCCCAAAGAGTGCTTAGTGGACGCGAACGAGGAGTTCCACGCTCCAATGGTGGACCTTGGAGGGTTCCTAAGGGGTGATGATGACGAGGCCACAAGCCGAGCCGTTAGGCTCGTGCGCAAGGCGTGCTCGAGCCACGGGTGCTTCCAAGTGATCAACCATGGTGTTGATTCCCGTCTCATCAGGGAAGCATATGATCAAATGGACGCTTTTTTTAAGCTTTCGATTCGTAGAAAAGTGAGTGCTCGAAAGACTCCAGGTTCAGTATGGGGATATTCTGGTGCCCATGCTGATAGGTTCTCCTCCAAATTGCCTTGGAAAGAGACCCTCTCTTTTCCCTTTCATGACAACAATGAGTTAGAGCCGGTTGTTACTAGGTTCTTTAACAACACCTTAGGGGAAGACTTTGAACAAGCTGGAGTGGTATTCCAGAATTATTGTGAAGCCATGAAGCAGTTGGGGATGAAGCTGTTGGAGCTTTTGGCGATTAGCTTGGGAGTGGATAAGTTGCATTATAAGGACTTGTTTGAAGAAGGTTGTTCCGTCATGAGATGCAACTTTTACCCATCATGTCAGCAGCCAAGTCTTGCATTAGGGACTGGACCACATTGTGACCCAACATCTCTCACCATTCTTCACCAAGACCAAGTTGGAGGGCTTGATGTGTTCGCCGACAACACGTGGCAGACCGTTCCACCTCGTCCCGATGCCCTTGTAGTTAACATTGGTGATACTTTCACGGTGCGTAACATTCGTATAAGAGAAATCCAAATAACACATATTTTATTATTAAATAAAATTTCTTAAAAATTCATACAAATTATAGATCTCACATTTTATTCGGTGACTCTCACTCAAAATTTTATAAATTTTAATTAATAATGGAATGTATTAAGATGAAATGTATGTATTAGAAAGTATGTTGCTCATAGCTTTTT
Coding sequences of Glyma.13g035600
>Glyma.13g035600.1 sequence-type=CDS polypeptide=Glyma.13g035600.1.p locus=Glyma.13g035600 ID=Glyma.13g035600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCAGGTTTCTACTTGGTGTCATCACTGAACCACCAAGAAGTAGTCCAAAGCCGTTTCTTCGATCCCTCTTGGCTACAAATGCAACCCCACGTTCCCATGAGCTTTGTTTGGCCCAAAGAGTGCTTAGTGGACGCGAACGAGGAGTTCCACGCTCCAATGGTGGACCTTGGAGGGTTCCTAAGGGGTGATGATGACGAGGCCACAAGCCGAGCCGTTAGGCTCGTGCGCAAGGCGTGCTCGAGCCACGGGTGCTTCCAAGTGATCAACCATGGTGTTGATTCCCGTCTCATCAGGGAAGCATATGATCAAATGGACGCTTTTTTTAAGCTTTCGATTCGTAGAAAAGTGAGTGCTCGAAAGACTCCAGGTTCAGTATGGGGATATTCTGGTGCCCATGCTGATAGGTTCTCCTCCAAATTGCCTTGGAAAGAGACCCTCTCTTTTCCCTTTCATGACAACAATGAGTTAGAGCCGGTTGTTACTAGGTTCTTTAACAACACCTTAGGGGAAGACTTTGAACAAGCTGGAGTGGTATTCCAGAATTATTGTGAAGCCATGAAGCAGTTGGGGATGAAGCTGTTGGAGCTTTTGGCGATTAGCTTGGGAGTGGATAAGTTGCATTATAAGGACTTGTTTGAAGAAGGTTGTTCCGTCATGAGATGCAACTTTTACCCATCATGTCAGCAGCCAAGTCTTGCATTAGGGACTGGACCACATTGTGACCCAACATCTCTCACCATTCTTCACCAAGACCAAGTTGGAGGGCTTGATGTGTTCGCCGACAACACGTGGCAGACCGTTCCACCTCGTCCCGATGCCCTTGTAGTTAACATTGGTGATACTTTCACGGCATTATCAAATGGGAGATACAAGAGTTGCCTGCACAGGGCAGTGGTTAACAAGTACAAAGAGAGGAGGTCCTTGGCATTCTTTCTGTGCCCCAAAGAGGACAAGGTGGTGAGAGCCCCAGAGGATATTGTGCGTAGGGATGGGACAAAACAGTATCCAGATTTCACATGGTCGAGTTTGCTTGAATTCACACAAAAGTACTACAGAGCCGACGAAGCTACACTGCAGAACTTCACCAAGTGGTTGCTATCCTCCAAACAACAAACCCTTTAG

>Glyma.13g035600.2 sequence-type=CDS polypeptide=Glyma.13g035600.2.p locus=Glyma.13g035600 ID=Glyma.13g035600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCAGGTTTCTACTTGGTGTCATCACTGAACCACCAAGAAGTAGTCCAAAGCCGTTTCTTCGATCCCTCTTGGCTACAAATGCAACCCCACGTTCCCATGAGCTTTGTTTGGCCCAAAGAGTGCTTAGTGGACGCGAACGAGGAGTTCCACGCTCCAATGGTGGACCTTGGAGGGTTCCTAAGGGGTGATGATGACGAGGCCACAAGCCGAGCCGTTAGGCTCGTGCGCAAGGCGTGCTCGAGCCACGGGTGCTTCCAAGTGATCAACCATGGTGTTGATTCCCGTCTCATCAGGGAAGCATATGATCAAATGGACGCTTTTTTTAAGCTTTCGATTCGTAGAAAAGTGAGTGCTCGAAAGACTCCAGGTTCAGTATGGGGATATTCTGGTGCCCATGCTGATAGGTTCTCCTCCAAATTGCCTTGGAAAGAGACCCTCTCTTTTCCCTTTCATGACAACAATGAGTTAGAGCCGGTTGTTACTAGGTTCTTTAACAACACCTTAGGGGAAGACTTTGAACAAGCTGGAGTGGTATTCCAGAATTATTGTGAAGCCATGAAGCAGTTGGGGATGAAGCTGTTGGAGCTTTTGGCGATTAGCTTGGGAGTGGATAAGTTGCATTATAAGGACTTGTTTGAAGAAGGTTGTTCCGTCATGAGATGCAACTTTTACCCATCATGTCAGCAGCCAAGTCTTGCATTAGGGACTGGACCACATTGTGACCCAACATCTCTCACCATTCTTCACCAAGACCAAGTTGGAGGGCTTGATGTGTTCGCCGACAACACGTGGCAGACCGTTCCACCTCGTCCCGATGCCCTTGTAGTTAACATTGGTGATACTTTCACGGTGCGTAACATTCGTATAAGAGAAATCCAAATAACACATATTTTATTATTAAATAAAATTTCTTAA
Predicted protein sequences of Glyma.13g035600
>Glyma.13g035600.1.p sequence-type=predicted peptide transcript=Glyma.13g035600.1 locus=Glyma.13g035600 ID=Glyma.13g035600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSGFYLVSSLNHQEVVQSRFFDPSWLQMQPHVPMSFVWPKECLVDANEEFHAPMVDLGGFLRGDDDEATSRAVRLVRKACSSHGCFQVINHGVDSRLIREAYDQMDAFFKLSIRRKVSARKTPGSVWGYSGAHADRFSSKLPWKETLSFPFHDNNELEPVVTRFFNNTLGEDFEQAGVVFQNYCEAMKQLGMKLLELLAISLGVDKLHYKDLFEEGCSVMRCNFYPSCQQPSLALGTGPHCDPTSLTILHQDQVGGLDVFADNTWQTVPPRPDALVVNIGDTFTALSNGRYKSCLHRAVVNKYKERRSLAFFLCPKEDKVVRAPEDIVRRDGTKQYPDFTWSSLLEFTQKYYRADEATLQNFTKWLLSSKQQTL*

>Glyma.13g035600.2.p sequence-type=predicted peptide transcript=Glyma.13g035600.2 locus=Glyma.13g035600 ID=Glyma.13g035600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSGFYLVSSLNHQEVVQSRFFDPSWLQMQPHVPMSFVWPKECLVDANEEFHAPMVDLGGFLRGDDDEATSRAVRLVRKACSSHGCFQVINHGVDSRLIREAYDQMDAFFKLSIRRKVSARKTPGSVWGYSGAHADRFSSKLPWKETLSFPFHDNNELEPVVTRFFNNTLGEDFEQAGVVFQNYCEAMKQLGMKLLELLAISLGVDKLHYKDLFEEGCSVMRCNFYPSCQQPSLALGTGPHCDPTSLTILHQDQVGGLDVFADNTWQTVPPRPDALVVNIGDTFTVRNIRIREIQITHILLLNKIS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo