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Report for Sequence Feature Glyma.13g029400

Feature Type:gene_model
Chromosome:Gm13
Start:8622846
stop:8628308
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g029400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51690.1AT PIF1 helicase JGI N/AIEA
GO:0000723GO-bp telomere maintenance EnsemblGenomesN/AIEA
GO:0000723GO-bp telomere maintenance JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination EnsemblGenomesN/AIEA
GO:0006974GO-bp cellular response to DNA damage stimulus EnsemblGenomesN/AIEA
GO:0032508GO-bp DNA duplex unwinding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003678GO-mf DNA helicase activity EnsemblGenomesN/AIEA
GO:0003678GO-mf DNA helicase activity JGI N/AIEA
GO:0004386GO-mf helicase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG0987 KOG DNA helicase PIF1/RRM3 JGI N/AIEA
PTHR10492Panther UNCHARACTERIZED JGI N/AIEA
PF05970PFAM PIF1-like helicase JGI N/AIEA

Expression Patterns of Glyma.13g029400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g029400 not represented in the dataset
Glyma.13g029400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g029400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g14263 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g029400
>Glyma.13g029400.1 sequence-type=CDS polypeptide=Glyma.13g029400.1.p locus=Glyma.13g029400 ID=Glyma.13g029400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAACCATGAGCATGCAAATCATTGTGATACAGCACAAGCTAGGATAAAGAATAAAGGATTTTCTGATCTTGGTGATCAGCTCATGCAGTGTAGTCACTGTAATGCAAATATGTGGTATGTTGAAAGAGTCTCAAAAGATAAAAGAACTACAAATCCAAGATTCAGTTTATGTTGTGGAAATGGCAAGGTTGAACTTCCATTGTTACAGAATCCACCTAAATATCTCTACCAACTTTTGTATGATCATGGTACACCTGATAGTAAAAATTACCAGCAGAACATAAGGACAAATAACATGATGTTTGCCTTTACTTCTGCTGGTATTAAGTTTGACAAATCAGTTAATCATTCAAGAGGACCTCTTATAATAAGAATTCAAGGTCAACCATGTCATAGAATAGGTAGTATGTTACCGATGCCTGGGAAAGAACCAAATTTGCACAATTGTATATCTTTGACACAGAAAATGAATCGACATAATCAAATTCAAGAACACATTGTTTCACAACTTAGTGAGATGCTAGATGAATACAACGTGCATGCAAAAACTTTCAGGATGGCTAGAGATAGATTGCAAGATGTTCAGGTGAATAATATCAAGTTGAAATTGATTGCTAATCATGAGAAAGATGGTCGTACATATAATGTACCTACTGTTCCTGAAGTTGCAGCACTAATAGTAGGCGATTTTGATGCAAATTCAAAAAGAGATATTATTATTGAAACTCAGCATGGACAACTACAAAGGATCCATGAATTACATTCTAGCTATCTAGCTCTACAATACCCTCTCTTATTTCCTTACGGGGAAGATGGATATAGACCTGATATTTTACATAGCAGTCGGTCAGATGGTAAGAAATGGAAAAGAAATCGTCTTACAATGAGGGAGTGGTTTTCTTATAGGCTACAATGCATATCAAATGAATCTATAACTTTGTTGAATTCTAAGAGACTATTCCAAAAATTTGTTGTTGACGGCTATACTATGGTTGACAAGTTTTGTAGCTTACAACATTCATTGGATAATGGAAGTAGGAGAGGCCTAAATAAAGGTAAAAGAGTCATTTTGCCTTCAACTTTTGTTGGCAGTCCGCGCTATATGGATCAACTTTATTTTGATGGTATGGTCATATGTAGCCATGTGGGCTTCCCAAATCTGTTTATTACTTTAACCTGCAATCAAAACTGGCCTGAAATCCATAGATTGCTGAGTCCGTTGAATCTGAAAGCAGTAGATAGGTCAGACATAATCTCCAGAGTCTTCAAACTAAAGTATGAAAAAATGCTTATTGACCTGACAAAGAATCACATGCTAGGCAAAGTTATTGCATTAAAAAACCATATGGTTCATGGTCCATGTGGAAGTCTGAATCCTGGATCTCCATGCATGAAAAAAGGCAAGTGTAGTCGTTTCTATCCTAAAATGTTCCAGCCGCATACTGTTTTAGATGCTGATGGTTTTCCCGTCTATCGTAGAAGAAACAACGGTAATGCAATTGAGAAAAATGGTGTTATAGTTGATAACAGGTATATTGTACCTTACAATCCAAGATTGCTCAGAAAATACCAAGCGCATATCAATATTGAATGGTGTAACCAAAACACTTCTATCAAATATTTATTTAAGTACATCAACAAGGGATATGATAGAGTGACTGCTGTTTTGATTGATGAAGATAATGATCAAACTGAGAATGGTGGCACGCATAATGATGAGATCAAAGAATATCTAGATTGCAGATACATATGTCCCTGTGAATCTACTTGGAGAATCTTTGGATTTCCAATACATGGCAGAAAACTTGTTGTTGAAAGATTACACTTCCATCTTCCAGGCCAACATAGTGTTCTCTATGAAGACCATGATGATATTGATGATGTATTGTCTAAGCCAAGGAGAAATCTTACTTATGCAGAATTTGTTTCTAAGTTTGTATACAATCAGAAGAAAAGATGTTGGCACCTTAGGAAGAAAGGCTATACCATTGGCAGATTACTATGGGTTCCACCAATTACAGGGGAATTATTTTATTTGAGAATGATGCTTACTGTTTGTAAAGGAGCTACCTCATTTGAGGATTTAAGAACAATCGATAATGTTCAGTATTCTACATATAAAGAATCATGTTTTGCTATGGGATTTTTACAAGATGATAAAGAATTTATTGAGGCAATCAAAGAAGCAAAAGACTGGGGTTCAACACATTATATAAGAAAGCTATTTGTGTTGTTACTTTTAACTGCAACAATGAGCAAACCTGAACAAGTTTGGGACCAAACTTGGCATTGGATGGCTGATGACATTGTCTATAATTATAAAAAATCATCAACAAGTCCAGCATTGCAGCTTGATGATAGAACTCTTCAAAATTTGGTCTTGCTTCAAATTGAAGAACTGCTGCAAGCAAATCAAAGATTGCTAAGAGACTATCCTTCAATGCCATATCCAGAGGATGCGAATTGTCCAGCTTATCTAGACAATAGCCTTATATTAGCTGAACTGAACTACAACAATGAAGAACTTAGATCAGAGTTTGAACATCTATTTTCTCACATGACAGATGAACAAGCTTCAATTTACAACCAGATTGTTGAAGCTGTTAATAAAGATAAAGGTGGTATGTTTTTTCTCTATGGATATGGAGGTACAGGAAAAACATACATTTGGAAAACACTTGCAAGTTCACTAAGAGCTGACAATAAAATTGTAATAATGGTAGCCTCTAGCGGCATAGCTTCTCTACTATTTCCTAGAGGTAGAACTGCACATTCAAAATTTAAAATTCTAGTTCCAGTTTTTGAAGACTCAACTTGCAATATCCATCAAGGAACTCAATTAGCTGAACTATTAAATCAGACAAGTCTAATCATTTGGGATGAAGCACCCATGGCTCACAAATTCTGTTTTGAGGCACTTGATCACAGTCGTAGAGATATCATCAAACACAACTCAAAGGACAATAAAATCTTTGGAGGTAAAGTCATGGTCTTTGGTGGAGATTTCCGGCAGATCCTGCCAGCCATTCCAAGAGGCAGCCGCTCTGATATTGTTAACGCAACAATTGATTCCTCTTATCTATGGGTTCACTGTCAAATCTTGAGACTGACAAAAAACATGTGTTTACAAAACAACATGGAAGCAACAGATCAAGAAGAAATTGCAGCTTTTGCACAATGGATTATAGATATTGGTGATGGTATTATTGGAGATGAAAATGATGGCTATGCTACTATTGAAATTCCACAGGAACTATTAATCACAGAATATAATGATCCTATTCATAGTATAATTAGCTCTACATTTCCAGATCTATCTTGTCATCACAATGATCCTGAATACTTCCAAACCAGAGCAATATTAGCTTCCACAAATGAAACAGTGCAACGAGTTAATGATTATATGCTTACAATGATACCGGGTGAACAAATGGAATATCTAAGCTCTGATTCAGTTGACAAATCCAAAACCATTGAAAGTTGTCATTTCCGCTCACTGTCAACTAAATTTCTGAATTCATTGACAACATCTGGCTTACCCAATCACTGTCTCAAACTCAAGATTGGAACACCAATAATTCTATTAAGGAACTTAGACCAAACTCAAGGGTTGTGTAATGGTACTAGGTTAATTATCACAAAACTAGCAAAACATGTTATTGCAGCTGACATAATTTCTGGGACAAATATCGGAGATCATTTTTATATCCCACGAATGTCTATGTCGCCTTCACAGTCACCATGGCCTTTTAAGCTATTGAGGAGACAATTTCCGATAATGCTTTCTTATGCTATGACAATTAATAAATCCCAAGGACAATCACTATCTTCAGTTGGACTTTACTTGCCAAAACCAGTTTTTTCACATGGCCAACTATATGTTGCATTATTAAGAGTCAAGTCAAAAAAAGGACTTCGAATTTTAATACATGATCAGGAGGACAAAAAAAAATGA
Predicted protein sequences of Glyma.13g029400
>Glyma.13g029400.1.p sequence-type=predicted peptide transcript=Glyma.13g029400.1 locus=Glyma.13g029400 ID=Glyma.13g029400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDNHEHANHCDTAQARIKNKGFSDLGDQLMQCSHCNANMWYVERVSKDKRTTNPRFSLCCGNGKVELPLLQNPPKYLYQLLYDHGTPDSKNYQQNIRTNNMMFAFTSAGIKFDKSVNHSRGPLIIRIQGQPCHRIGSMLPMPGKEPNLHNCISLTQKMNRHNQIQEHIVSQLSEMLDEYNVHAKTFRMARDRLQDVQVNNIKLKLIANHEKDGRTYNVPTVPEVAALIVGDFDANSKRDIIIETQHGQLQRIHELHSSYLALQYPLLFPYGEDGYRPDILHSSRSDGKKWKRNRLTMREWFSYRLQCISNESITLLNSKRLFQKFVVDGYTMVDKFCSLQHSLDNGSRRGLNKGKRVILPSTFVGSPRYMDQLYFDGMVICSHVGFPNLFITLTCNQNWPEIHRLLSPLNLKAVDRSDIISRVFKLKYEKMLIDLTKNHMLGKVIALKNHMVHGPCGSLNPGSPCMKKGKCSRFYPKMFQPHTVLDADGFPVYRRRNNGNAIEKNGVIVDNRYIVPYNPRLLRKYQAHINIEWCNQNTSIKYLFKYINKGYDRVTAVLIDEDNDQTENGGTHNDEIKEYLDCRYICPCESTWRIFGFPIHGRKLVVERLHFHLPGQHSVLYEDHDDIDDVLSKPRRNLTYAEFVSKFVYNQKKRCWHLRKKGYTIGRLLWVPPITGELFYLRMMLTVCKGATSFEDLRTIDNVQYSTYKESCFAMGFLQDDKEFIEAIKEAKDWGSTHYIRKLFVLLLLTATMSKPEQVWDQTWHWMADDIVYNYKKSSTSPALQLDDRTLQNLVLLQIEELLQANQRLLRDYPSMPYPEDANCPAYLDNSLILAELNYNNEELRSEFEHLFSHMTDEQASIYNQIVEAVNKDKGGMFFLYGYGGTGKTYIWKTLASSLRADNKIVIMVASSGIASLLFPRGRTAHSKFKILVPVFEDSTCNIHQGTQLAELLNQTSLIIWDEAPMAHKFCFEALDHSRRDIIKHNSKDNKIFGGKVMVFGGDFRQILPAIPRGSRSDIVNATIDSSYLWVHCQILRLTKNMCLQNNMEATDQEEIAAFAQWIIDIGDGIIGDENDGYATIEIPQELLITEYNDPIHSIISSTFPDLSCHHNDPEYFQTRAILASTNETVQRVNDYMLTMIPGEQMEYLSSDSVDKSKTIESCHFRSLSTKFLNSLTTSGLPNHCLKLKIGTPIILLRNLDQTQGLCNGTRLIITKLAKHVIAADIISGTNIGDHFYIPRMSMSPSQSPWPFKLLRRQFPIMLSYAMTINKSQGQSLSSVGLYLPKPVFSHGQLYVALLRVKSKKGLRILIHDQEDKKK*






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