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Report for Sequence Feature Glyma.13g027600

Feature Type:gene_model
Chromosome:Gm13
Start:6775315
stop:6790958
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g027600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06600.1AT ubiquitin-specific protease 12 JGI N/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process JGI N/AIEA
GO:0016579GO-bp protein deubiquitination EnsemblGenomesN/AIEA
GO:0004221GO-mf ubiquitin thiolesterase activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0036459GO-mf thiol-dependent ubiquitinyl hydrolase activity EnsemblGenomesN/AIEA
PTHR24006Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24006:SF110Panther UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 28 JGI N/AIEA
PF00443PFAM Ubiquitin carboxyl-terminal hydrolase JGI N/AIEA
PF00917PFAM MATH domain JGI N/AIEA

Expression Patterns of Glyma.13g027600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g027600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g16170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g027600
>Glyma.13g027600.1 sequence-type=CDS polypeptide=Glyma.13g027600.1.p locus=Glyma.13g027600 ID=Glyma.13g027600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCGTGATGATGCCCGCTCCCATTGATCAGCAAGAGGACGAGGACGTGCTCGTGCCGGACGCGGATTTGCCTGAGAACAATCACCAACCCATGGAAGTTGTAGCTCAACCTGAAAATGCCAATACTGTGGAGAGTCAGCCCGTTGAAGATCCTCCGTCATCTAGATTTACATGGAGAATTGATAACTTTTCAAGGCTGAATACAAAGAAGCTCTATTCGGAAATATTTGTTGTTGGTGGCTATAAATGGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCTGATTCAGCCAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTTGTTAATCAAATGCATAATAAGTATTCTGTGAGAAAAGACACACAGCACCAGTTTAATGCACGTGAAAGTGATTGGGGTTTCACATCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTGTGCATGATACTCTTATAGTCGAAGCTGAGGTTCTTGTTCGTAGGATTGTTGATTACTGGACTTATGATTCAAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCAACAACTGAGAATGATATGCCCACTGGTAGCATCCCTTTGGCCTTGCAAAGTTTATTCTACAAGCTTCAATACAGTGACACCAGTGTTGCAACAAAGGAGCTGACAAAGTCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTAAATCGGGTTCTTTGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACCATACAAAAATTATTTGAAGGGCACCATATGAATTACATAGAATGCATCAATGTAGACTACAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTTAAAGGTTGTCGTGATGTTTATGCTTCCTTTGATAAGTATGTCGAAGTTGAAAGTCTTGAGGGGGATAACAAATATCATGCTGAACAGTATGGTTTGCAGGATGCTAAGAAAGGTGTCCTATTTATTGATTTTCCTCCTGTCCTTCAACTCCAGCTAAAAAGATTTGAATATGATTTTATGCGGGATACTATGGTTAAGATTAATGACCGTTATGAGTTTCCCTTACAACTTGATCTTGATCGTGAGGATGGGAAATATCTATCACCTGATGCTGATAGGAGTGTCCGCAATCTTTACACACTTCACAGGTAA
Predicted protein sequences of Glyma.13g027600
>Glyma.13g027600.1.p sequence-type=predicted peptide transcript=Glyma.13g027600.1 locus=Glyma.13g027600 ID=Glyma.13g027600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTVMMPAPIDQQEDEDVLVPDADLPENNHQPMEVVAQPENANTVESQPVEDPPSSRFTWRIDNFSRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVVNQMHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVHDTLIVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPTGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVESLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREDGKYLSPDADRSVRNLYTLHR*






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