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Report for Sequence Feature Glyma.13g026400

Feature Type:gene_model
Chromosome:Gm13
Start:5845494
stop:5847686
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g026400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05020.1AT ENTH/ANTH/VHS superfamily protein JGI N/AIEA
GO:0048268GO-bp clathrin coat assembly EnsemblGenomesN/AIEA
GO:0030136GO-cc clathrin-coated vesicle EnsemblGenomesN/AIEA
GO:0005543GO-mf phospholipid binding EnsemblGenomesN/AIEA
GO:0005543GO-mf phospholipid binding JGI N/AIEA
GO:0005545GO-mf 1-phosphatidylinositol binding EnsemblGenomesN/AIEA
GO:0030276GO-mf clathrin binding EnsemblGenomesN/AIEA
PTHR22951Panther CLATHRIN ASSEMBLY PROTEIN JGI N/AIEA
PTHR22951:SF1Panther JGI N/AIEA
PF07651PFAM ANTH domain JGI N/AIEA

Expression Patterns of Glyma.13g026400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g026400 not represented in the dataset
Glyma.13g026400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g026400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g13383 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g026400
>Glyma.13g026400.1 sequence-type=CDS polypeptide=Glyma.13g026400.1.p locus=Glyma.13g026400 ID=Glyma.13g026400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAAGCAAACTAAGGAATGCAATTGGGGCAGTGAAGGACCAAACAAGCATTAGTCTTGCCAAGGTAACCAATGCAGCCAATCTTGAAGTCACCATCCTTAAAGCCACAAACCATGACAAAAATCCAATTGAAGAGCGTCATGTGAATGAAATTTTGAACATAGTCTCCTCTAACAAAGTATATGCAGCTGCTTGTGCTCATTACATAGGAAAACGCATTGGTAAGACCCGCAATTGGGTTGTTGCTCTCAAATGTCTCATGATTGTCCTTAGAATATTTCAAGATGGTGATCCATATTTTCCTAGGGAAGTATTCCATGCAATGAAAAGAGGTGCAAAAATTCTCAACCTTTCAAATTTCAAGGATAACTCTAATTCTAGCTCTTGGGATTATACTGCATTCATTAGAACATTTGCTTTATACCTCGATGAACGCTTAGATTGCTTCCTAACGGGAAAGCTCCAACGCCGGTTCACATATCACAACCAATTTCATGAGAGGAACCAAAAGAACAAGTTATCCAATGAGCCAGGTATCAAAGACATGAAACCTACAATGGTGCTTGACAGAATTTCACATTGGCAAAGGTTGTTGGATAGAGCTATTGGATCAAGGCCTACAGGATTAGCTAGGACCAACCGTTTGGTTCAAATTTCTCTTTATGCTATTGTGCGAGAAAGCTTTGATCTGTATAGGGATATCTCCGATGGGCTTGCTGTTGTCTTAGATAGCTTCTTCAATTTGCCATTTTTAGCAAGCGCTGCAACATTCAATGCTTGTGTTAAATCCTACAAGCAATTTGATGAATTATCTACTTTTTATTCGTTTTGTGCAAGCATTGGGGTTGGGAGATCGTATGACTACCCAAGAGTGGCAAAAGTTTCTGAGGAGCTTATGGAAACATTACAAGACTTCTTAAATGACCAAGCTTCTTTCCCGACAAATAATAGCTCAAAACACTTCCTTTTTCCTCCCCCAAAGGACCATACAGGTCCAAGTTCATCACAAGACGAAGCTAGTGAAAGATATGGGACACTTGAAAGGTTTTTTGAAATAGGGTCTGAATCAGGGTCACAATGTACATCATTGGAAGATCTCATGAGTGCTACTGATGCTGCTATGAGTCCTAGGAGATCGCTTGAGCAAGACATGTATTCAGAGCAATCAGACCAAGATGAGAAAGAATCGCTATATGATGATTATGCTATTGCAAATGGTCCTGATTCTACAAAATCATTTTCAATTGATCAAACATCGAGGTCAAGCTTGGATGTGGTAAGTTTTAATGAATTGCAGTTGGAAGTGCAACAAAATGAAAAAAAATTGTGGGAGCAGCAAAATATAAATGCAAGTTCCCATAATAGCTCCAAAGATTGTTGGGAATTAGTTTTGGCAAAGACAGTAACTGCACCCATTGAAACATCACCCAAATTGGCAAATGGATTTCATCCATCTGTCACCTTATTTGATCAAGCTTCAGTTCCTCAAGACAAGTACAACCCATTCCTTGATGACACAACAATTGTTGCTCCCCCTGTAACCACTAGTGATAATTTTATTGATGTTTTTGATTTTGATGTGGCACCAACATTTAAGGCAACAACACAAACCTTTTATGCTCAGGATCTTGTTGTAACAACCTTCTCAGATCAAAGTTCCAATTCCATAGCAAATCCAGATGTAATTTTTGGTGACATGTATCCAAATGAGACAACAAATGAGGCAACTTTCAGAGCTCAAGGTTCTTCTGCAAAGAACAATATGATAGTGCCATTAAATTCTAATACTAAAACTTCAGATAACATGATTACAACACCAAGTTTCCAGTCGCAATGTTCTTTTAAGAATGCTTCACTTCCAACATTCCAAATGCACAAGTCAAATCTTGATGCCATAATGGAAGCACCAACTCTTATTTCTCCTCAGAATCCTAATTTGAGTATTCTTCCCATACATTTCCAAGCACACAATTTGTATGCTTCAACAATACCACCAACATTTAGTGCAAAGGATTGTAATGAGACAACATTGGCAGCTTCCATAGAGGATGATCCTTTTGGACCATGGCCTAGTACAAATACCAACGAACAAACTTTAAATAATGTATCAATGCAAGAGGATACTTTGTCGCGACAACAACAACTATGGTTAGAGCAACAACAAAAGATCATATCAAAGCATTTGACTTGA
Predicted protein sequences of Glyma.13g026400
>Glyma.13g026400.1.p sequence-type=predicted peptide transcript=Glyma.13g026400.1 locus=Glyma.13g026400 ID=Glyma.13g026400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSKLRNAIGAVKDQTSISLAKVTNAANLEVTILKATNHDKNPIEERHVNEILNIVSSNKVYAAACAHYIGKRIGKTRNWVVALKCLMIVLRIFQDGDPYFPREVFHAMKRGAKILNLSNFKDNSNSSSWDYTAFIRTFALYLDERLDCFLTGKLQRRFTYHNQFHERNQKNKLSNEPGIKDMKPTMVLDRISHWQRLLDRAIGSRPTGLARTNRLVQISLYAIVRESFDLYRDISDGLAVVLDSFFNLPFLASAATFNACVKSYKQFDELSTFYSFCASIGVGRSYDYPRVAKVSEELMETLQDFLNDQASFPTNNSSKHFLFPPPKDHTGPSSSQDEASERYGTLERFFEIGSESGSQCTSLEDLMSATDAAMSPRRSLEQDMYSEQSDQDEKESLYDDYAIANGPDSTKSFSIDQTSRSSLDVVSFNELQLEVQQNEKKLWEQQNINASSHNSSKDCWELVLAKTVTAPIETSPKLANGFHPSVTLFDQASVPQDKYNPFLDDTTIVAPPVTTSDNFIDVFDFDVAPTFKATTQTFYAQDLVVTTFSDQSSNSIANPDVIFGDMYPNETTNEATFRAQGSSAKNNMIVPLNSNTKTSDNMITTPSFQSQCSFKNASLPTFQMHKSNLDAIMEAPTLISPQNPNLSILPIHFQAHNLYASTIPPTFSAKDCNETTLAASIEDDPFGPWPSTNTNEQTLNNVSMQEDTLSRQQQLWLEQQQKIISKHLT*






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