SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07800.1 | AT | Thymidine kinase | JGI | N/A | IEA |
| GO:0006259 | GO-bp | DNA metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009157 | GO-bp | deoxyribonucleoside monophosphate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0046104 | GO-bp | thymidine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0071897 | GO-bp | DNA biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0004797 | GO-mf | thymidine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004797 | GO-mf | thymidine kinase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG3125 | KOG | Thymidine kinase | JGI | N/A | IEA |
| PTHR11441 | Panther | THYMIDINE KINASE | JGI | N/A | IEA |
| PF00265 | PFAM | Thymidine kinase | JGI | N/A | IEA |
| PWY-7199 | SoyCyc9 | pyrimidine deoxyribonucleosides salvage | Plant Metabolic Network | ISS | |
| GN7V-42700 | SoyCyc9-rxn | deoxynucleoside kinase | Plant Metabolic Network | ISS |
|
Glyma.13g025800 not represented in the dataset |
Glyma.13g025800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g13040 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g025800.1 sequence-type=CDS polypeptide=Glyma.13g025800.1.p locus=Glyma.13g025800 ID=Glyma.13g025800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTCTTCTTCGTCCCTCTCATTGGACACAGCCAAAGACCTTTCGAACTCATCTGGTGAGGTTCATGTCATCGTCGGTCCCATGTTCGCTGGCAAGACCACTGCCCTTCTTTGTCGCATCGAATCCGAACTCAACGCTGCCAAGAATGTGGTGTTGTTAAAATCGAGCAAGGATACAAGATATGCAATTGACTCGGTTGTGACGCACGATGGGATTAAATTTCCTTGCAGGGCGTTACCGGATCTGTTGTCGTTCAGGGAAAAACACGGCGATGATGCTTATCAGAAGTTGGATGTGATTGGCATAGACGAGGCTCAATTTTTTGAGGACCTATACGAGTTTTGCTGCAAGGCTGCTGATGAAGATGGCAAAACCGTAATTGTTGCAGGCCTGGATGGTGATTACTTAAGGAGAAGCTTTGGCTCTGTGCTTCACATAATTCCACTTGCTGATTCTGTGACCAAACTAACAGCACGTTGTGAACTGTGTGGCAAACGTGCTTTTTTCACCTTGAGGAAGACAGAGCAGAGAGAGACTGAACTAATTGGTGGGGCTGATTTGTATATGCCGGTTTGTCGCCTGCACTACCTGAACAGCCAAGTTGCTGAGAGGAGTGTTCTCGAATCTCAAAATTTTAAAACCGATTGA
>Glyma.13g025800.1.p sequence-type=predicted peptide transcript=Glyma.13g025800.1 locus=Glyma.13g025800 ID=Glyma.13g025800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSSSLSLDTAKDLSNSSGEVHVIVGPMFAGKTTALLCRIESELNAAKNVVLLKSSKDTRYAIDSVVTHDGIKFPCRALPDLLSFREKHGDDAYQKLDVIGIDEAQFFEDLYEFCCKAADEDGKTVIVAGLDGDYLRRSFGSVLHIIPLADSVTKLTARCELCGKRAFFTLRKTEQRETELIGGADLYMPVCRLHYLNSQVAERSVLESQNFKTD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
