SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g024700

Feature Type:gene_model
Chromosome:Gm13
Start:4631550
stop:4655647
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g024700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74040.1AT 2-isopropylmalate synthase 1 JGI N/AIEA
GO:0019752GO-bp carboxylic acid metabolic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0046912GO-mf transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer EnsemblGenomesN/AIEA
KOG2368 KOG Hydroxymethylglutaryl-CoA lyase JGI N/AIEA
PTHR10277Panther HOMOCITRATE SYNTHASE-RELATED JGI N/AIEA
PTHR10277:SF9Panther 2-ISOPROPYLMALATE SYNTHASE 1, CHLOROPLASTIC-RELATED JGI N/AIEA
PF00682PFAM HMGL-like JGI N/AIEA
BRANCHED-CHAIN-AA-SYN-PWYSoyCyc9 superpathway of branched chain amino acid biosynthesis Plant Metabolic Network ISS
LEUSYN-PWYSoyCyc9 L-leucine biosynthesis Plant Metabolic Network ISS
GN7V-60197SoyCyc9-rxn homocitrate synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.13g024700
LocusGene SymbolProtein Name
N-56 probable 2-isopropylmalate synthase

Expression Patterns of Glyma.13g024700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g024700 not represented in the dataset
Glyma.13g024700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g024700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g12484 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g024700
>Glyma.13g024700.1 sequence-type=CDS polypeptide=Glyma.13g024700.1.p locus=Glyma.13g024700 ID=Glyma.13g024700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAACCAAAACCTCCACTCCAAGTTCTCAATCCCCAAAACTCTCTCATCTCCGCCCTCAATACATTCCCAACCACATCCCCGACTCCTCCTACGTCCGCATCTTGGACACCACCCTCCGCGACGGCGAACAATCCCCGGGAGCCACCATGACAGCAAAGGAGAAGCTCGACATCGCACGGCAGCTGGTGAAGCTGGGCGTGGACATCATCCAGCCCGGCTTCCCTTCTGCGTCGAACAGCGACTTCATGGCCGTCAAAATGATAGCACAAGAGGTTGGCAATGCTGTTGATGATGATGGTTATGTGCCTGTCATTGCTGGCTTCTGTCGGTGCGTTGAGAAGGACATTTCTACTGCATGGGAGGCTGTGAAGTATGCTAAGAGGCCACGGCTTTGTACTTCCATAGCTACGAGCCCTATTCACATGGAGCACAAGCTGAGAAAGAGTAAAGATCAGGTGATTCAGATTGCCAGGGATATGGTCAAGTTTGCACGGAGTTTGGGTTGCAATGATATTCAGTTCGGTGCTGAAGATGCTACTAGATCAGATAGAGAATTTCTCTATGAAATTCTTGGAGTAGTTATTGAAGCCGGGGCAACAACAGTGAACATAGCCGACACTGTAGGTATAGTAATGCCATTGGAGTTAGGAAAATTAATTGTTGATATAAAAGACAATACCCCAGGAATTGCGAATGTTATTATTTCGACTCATTGCCATAATGATCTTGGGCTTGCTACGGCTAACACCATCGAGGGTGCTCGTACAGGTGCACGGCAATTAGAAGTAACCATTAATGGGATTGGGGAAAGGGCTGGAAATGCGTCGTTAGAAGAGGTTGTGATGGCCTTGGCATCCAAGGGAGATCATGCCTTAAATGGTCTATATACAAGAATCAATACAAGACACATATTAGAGACAAGCAAGATGGTCGAAGAATACTCTGGTATGCATTTACAACCTCACAAGCCTCTTGTTGGAGCTAATGCATTTGTCCATGCAAGTGGCATTCATCAGGATGGAATGCTTAAACATAAAGGTACATATGAAACAATATCTCCTGAGGAAATTGGACATAAAAGAACCACCAGAATTGGTATTGTGCTAGGGAAGCTTAGGTATGCAAATTACTTTTTTCTCAAATATGCTTATGTTAGAAAAAGCATGACTATCAATATAAGAGGAAGGTGA
Predicted protein sequences of Glyma.13g024700
>Glyma.13g024700.1.p sequence-type=predicted peptide transcript=Glyma.13g024700.1 locus=Glyma.13g024700 ID=Glyma.13g024700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPTKTSTPSSQSPKLSHLRPQYIPNHIPDSSYVRILDTTLRDGEQSPGATMTAKEKLDIARQLVKLGVDIIQPGFPSASNSDFMAVKMIAQEVGNAVDDDGYVPVIAGFCRCVEKDISTAWEAVKYAKRPRLCTSIATSPIHMEHKLRKSKDQVIQIARDMVKFARSLGCNDIQFGAEDATRSDREFLYEILGVVIEAGATTVNIADTVGIVMPLELGKLIVDIKDNTPGIANVIISTHCHNDLGLATANTIEGARTGARQLEVTINGIGERAGNASLEEVVMALASKGDHALNGLYTRINTRHILETSKMVEEYSGMHLQPHKPLVGANAFVHASGIHQDGMLKHKGTYETISPEEIGHKRTTRIGIVLGKLRYANYFFLKYAYVRKSMTINIRGR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo