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Report for Sequence Feature Glyma.13g023900

Feature Type:gene_model
Chromosome:Gm13
Start:4167869
stop:4178141
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g023900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04842.1AT threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0006435GO-bp threonyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0004829GO-mf threonine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR11451Panther TRNA SYNTHETASE-RELATED JGI N/AIEA
PTHR11451:SF5Panther THREONYL-TRNA SYNTHETASE, PUTATIVE / THREONINE--TRNA LIGASE-RELATED JGI N/AIEA
PF00587PFAM tRNA synthetase class II core domain (G, H, P, S and T) JGI N/AIEA

Expression Patterns of Glyma.13g023900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g023900 not represented in the dataset
Glyma.13g023900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g023900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g12114 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g023900
>Glyma.13g023900.1 sequence-type=CDS polypeptide=Glyma.13g023900.1.p locus=Glyma.13g023900 ID=Glyma.13g023900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCATACAAGTTGGAGATTTTGGAAAGCATTAAGGAGGATCCCATCACCATTTATCACATCGGTGATGAGTGGTGGGACCTCTGTGCTGGAAAGGAAGCCAATGTTGCAACGGATATACGGTACTGCATGGGAGAATGAAGAGCAGTTGAAAGCTTACCTTCACTTCAAAGAGGAAGCCAAGCGTCGAGATCACAGGCGCCTAGGGCAAGATCTTGATTTGTTTTCTATACAGGATGATGCTGGTGGGGGTCTAGTTTTCTGGCACCCAAACGGTGCTATGGTCAGACACATAATTGAAGATTTCTGGAAAAAAATTCACATGAAACGTGGCTATGATCTACTGTACACACCGCATGTGGCAAAAGCTGATCTTTGGAAGATCAGTGGTCATTTGGATTTCTGCAAAGAGAATATGTATGATCAGATGAGCGTTGAGGATGAGCTTCATCAGCTTCGGCCAATGAATTGTCCTTATCATATTTTGGTGTACAAAAGCAAGCTTCATTCCTATCGTGATTTCCCTATCAGGGTAGCAGAATTAGGAACTGTTTATAGATATGAACTATCTGGAAGTTTACATGGCCTTTTCCGTGTTAGAGGTTTCACACAGGATGACGCACATATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGGGGTGTCCTAGATCTTACTGAAGAAATACTATTACAATTTGGTTTTGAAAAGTACGAAGTAAATTTATCTACAAGGCTGGTTTTGAAAAGTATGAAGTAA
Predicted protein sequences of Glyma.13g023900
>Glyma.13g023900.1.p sequence-type=predicted peptide transcript=Glyma.13g023900.1 locus=Glyma.13g023900 ID=Glyma.13g023900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNHTSWRFWKALRRIPSPFITSVMSGGTSVLERKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPNGAMVRHIIEDFWKKIHMKRGYDLLYTPHVAKADLWKISGHLDFCKENMYDQMSVEDELHQLRPMNCPYHILVYKSKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLDDQIKDEIRGVLDLTEEILLQFGFEKYEVNLSTRLVLKSMK*






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