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Report for Sequence Feature Glyma.13g008200

Feature Type:gene_model
Chromosome:Gm13
Start:2346665
stop:2354504
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g008200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04600.1AT Nucleotidylyl transferase superfamily protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0006436GO-bp tryptophanyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0004830GO-mf tryptophan-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
KOG2145 KOG Cytoplasmic tryptophanyl-tRNA synthetase JGI N/AIEA
PTHR10055Panther TRYPTOPHANYL-TRNA SYNTHETASE JGI N/AIEA
PTHR10055:SF1Panther TRYPTOPHAN--TRNA LIGASE, CYTOPLASMIC JGI N/AIEA
PF00579PFAM tRNA synthetases class I (W and Y) JGI N/AIEA

Expression Patterns of Glyma.13g008200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g008200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g11390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g008200
>Glyma.13g008200.1 sequence-type=CDS polypeptide=Glyma.13g008200.1.p locus=Glyma.13g008200 ID=Glyma.13g008200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGCAACAACAGAGAGCGAGAAGAAGAAGCGAGAAGAAGAAGAGGAACCAGAACAAGTTGTGAACCCATGGGAAGTTTCAGCCAAAGGTAAAATCGATTACGACAAACTCATAGATCGTTTCGGTTGCCAGAAGCTCGGCGAAGCCCTAATTTCGCGTCTCGAGCAACTCACCTCTCGCACTCCTCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGCGATTTCGCGGAGATTCTGGACGCGTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTGCATTTGGGACACTTGATTCCGTTCATGTTCACTAAGTATTTGCAAGATGTGTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAGAAGTTCTTCTGGAAAAATCTTACTATAGAAGAGTGCAGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACGTTCATCTTCTCTGATTTCAATTATGTTGGCGGTTCCTTCTACAAGAACATGTGTGAGGTTGGAAAGCGTGTGACTTATAACCAGGCTGTTGGCATCTTTGGTTTCGCTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCAGTTCCATCATTTCCTAGTTCATTTCCTCACCTATTTTCTGGAAAAGAGAATCTTCGTTGTTTAATTCCTTGTGCAATTGACCAGGATCCATATTTTAGAATGACACGTGATGTTGCTCCTAAAATGGGTTTCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCAGCATTACAGGGAGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTGACCGATTCTGCAAAAGATATAAAGAACAAGGTAAACAAACATGCATTTTCTGGTGGGCAAGATTCTATAGAGAAACATAGGCAATTAGGGGCTAATCTTGAGGTAGATATACCAGTCAAATACCTTACTTTTTTCTTAGAAGATGATGATGAACTTGAACACATAAAGAAGGAATATGGAGAAGGACGCATGTTAACTGGCGAGGTAAAGCAGCGGCTAGTTCAAGTTTTGACTGAACTAGTGGAGAGGCATCGTAGGGCTCGGGCTTCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTATCAGACCACTTCCCCACATGTTTAGCTGA
Predicted protein sequences of Glyma.13g008200
>Glyma.13g008200.1.p sequence-type=predicted peptide transcript=Glyma.13g008200.1 locus=Glyma.13g008200 ID=Glyma.13g008200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTATTESEKKKREEEEEPEQVVNPWEVSAKGKIDYDKLIDRFGCQKLGEALISRLEQLTSRTPHVFLRRGVFFAHRDFAEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDVFKVPLVIQLTDDEKFFWKNLTIEECRRLARENAKDIIACGFDISKTFIFSDFNYVGGSFYKNMCEVGKRVTYNQAVGIFGFAGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPKMGFHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKHAFSGGQDSIEKHRQLGANLEVDIPVKYLTFFLEDDDELEHIKKEYGEGRMLTGEVKQRLVQVLTELVERHRRARASVTEEMVDAFMAIRPLPHMFS*






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