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Report for Sequence Feature Glyma.13g004600

Feature Type:gene_model
Chromosome:Gm13
Start:1241891
stop:1245722
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g004600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35410.2AT Clathrin adaptor complex small chain family protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0030117GO-cc membrane coat EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
KOG0934 KOG Clathrin adaptor complex, small subunit JGI N/AIEA
PTHR11753Panther CLATHRIN COAT ASSEMBLY PROTEIN JGI N/AIEA
PF01217PFAM Clathrin adaptor complex small chain JGI N/AIEA

Expression Patterns of Glyma.13g004600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g004600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g10800 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g004600
>Glyma.13g004600.1 sequence-type=CDS polypeptide=Glyma.13g004600.1.p locus=Glyma.13g004600 ID=Glyma.13g004600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCAACTTTGTGCTTCTCATTAGTCGCCAAGGGAAGGTGAGACTGACAAAATGGTACTCACCTTATTCTCAGAAAGAAAGGAGTAAGGTAATCCGTGAGCTCAGTGGAATGATTCTTTCCCGTGCTCCCAAGCAATGTAATTTTGTAGAATGGCGAGGACATAAAGTTGTTTATAAAAGGTATGCTAGTCTCTATTTCTGCATGTGCATTGATCAAGATGACAATGAATTAGAAGTCCTTGAAATAATTCATCATTTTGTGGAGATTCTTGACCGGTATTTTGGCAGTGTCTGTGAACTGGACTTAATATTCAACTTTCACAAGGCCTACTATATACTAGATGAAATTCTAATTGCCGGTGAGCTTCAAGAGTCCAGCAAGAAAACAGTTGCTCGATTGATAGCAGCACAGGATTCGTTGGTGGAGAATGCGAAGGAAGAAGTCAGTTCATTAAGTAATATAATTGCACAAGCCACTAAGTGA
Predicted protein sequences of Glyma.13g004600
>Glyma.13g004600.1.p sequence-type=predicted peptide transcript=Glyma.13g004600.1 locus=Glyma.13g004600 ID=Glyma.13g004600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MINFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILSRAPKQCNFVEWRGHKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVENAKEEVSSLSNIIAQATK*






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