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Report for Sequence Feature Glyma.13g003000

Feature Type:gene_model
Chromosome:Gm13
Start:787619
stop:797154
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g003000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14180.1AT Myzus persicae-induced lipase 1 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
KOG2624 KOG Triglyceride lipase-cholesterol esterase JGI N/AIEA
PTHR11005Panther LYSOSOMAL ACID LIPASE-RELATED JGI N/AIEA
PF04083PFAM Partial alpha/beta-hydrolase lipase region JGI N/AIEA
LIPAS-PWYSoyCyc9 triacylglycerol degradation Plant Metabolic Network ISS
GN7V-54179SoyCyc9-rxn triacylglycerol lipase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g003000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g003000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g10610 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g003000
>Glyma.13g003000.1 sequence-type=CDS polypeptide=Glyma.13g003000.1.p locus=Glyma.13g003000 ID=Glyma.13g003000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGACGCACTGATTAGGTTGTTTTCAGTAGTCTTGCTTTGCATTACAGCAGCACAAGGGAAAGAACAGCTTCACTCAAACAGTGAATGGCCAAAATCTTTTTCAGTTATTCGTGATACTGATGGTATCTGCAAAGTGGCAGAGACACAAGGTTACACATGTGAAGAACATAAGGCTACAACAGAGGATGGCTACATCCTGAGTTTGCAGAGGTTGCCCGCGGGACAGTCTGGTAAGAAAGCCCACAAGCCACCGGTGCTATTACAACATGGTCTCTTTTGTGATGCCATAGTATGGGTGGTCAATCCTCCAGATGAATCATTGGGATTTATCTTGGCAGACAATGGATATGATGTGTGGCTTGCCAATGTTCGTGGCACAAAATATAGCCGCGGGCACATATCACTTCATCCTAATGACATGGCTTATTGGGATTGGTCATGGGATGAATTAGCTAGGTATGATCTTCCTGCTTTTGTTCAGTATGTGTACAATCAAACCGGCCAGCGAATGCACTATGCAGGTCATTCCTTGGGAACCTTAATGGTTTTAGCGGATTTGTCTCGAGGGAAACTGTTGGACATGTTGAGATCAGCTGCATTACTTTGCCCAATTGCTCACTTGAATCATGTCACGTCGCCGGTGGCAAGAACTGCTGCTCAATCATTTATAGCTGACCCTCTATACTGGTTAGGCCTCCGTGAATTCATTCCAAACGGGGATGCTGCAAGCAAATTAGTGGGAGGCATCTGCCATATTCTAAACCTGATCAACTGCTCAAACAACCTACTGACACTAATCACAGGTCCAAACTGCTGCCTAAATTCATCTGCATTCAATGCCTATCTTGATCATGGATTACCGCCAACAGCAACCAAGAACTTGATCCATCTATGTCAAATGATTAGAACAGCAAAAATAGCAAAGTATGATTACGGTGACCAAAGACAAAATATGCAACACTATGGACAACGGGTTCCTCCTCTTTATGACATGACCAAAATTTCAAATGAATTTCCTCTTTTCCTCACCTATGGAAGACAAGATGCGCTATCCAATGTAAAGGATGTGCAACTTTTGCTCAATGACCTTAGAGATCATGATGGAAACAAGTTAGTAGTATTGTTTACGGAAGATTATTCTCACTATGATTTTATTATGGGTGTCAATGTTAACCAAATTATCTATGATCCTATGATAGTTTTCTTCGAGGTTAATTGA
Predicted protein sequences of Glyma.13g003000
>Glyma.13g003000.1.p sequence-type=predicted peptide transcript=Glyma.13g003000.1 locus=Glyma.13g003000 ID=Glyma.13g003000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADALIRLFSVVLLCITAAQGKEQLHSNSEWPKSFSVIRDTDGICKVAETQGYTCEEHKATTEDGYILSLQRLPAGQSGKKAHKPPVLLQHGLFCDAIVWVVNPPDESLGFILADNGYDVWLANVRGTKYSRGHISLHPNDMAYWDWSWDELARYDLPAFVQYVYNQTGQRMHYAGHSLGTLMVLADLSRGKLLDMLRSAALLCPIAHLNHVTSPVARTAAQSFIADPLYWLGLREFIPNGDAASKLVGGICHILNLINCSNNLLTLITGPNCCLNSSAFNAYLDHGLPPTATKNLIHLCQMIRTAKIAKYDYGDQRQNMQHYGQRVPPLYDMTKISNEFPLFLTYGRQDALSNVKDVQLLLNDLRDHDGNKLVVLFTEDYSHYDFIMGVNVNQIIYDPMIVFFEVN*






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