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Report for Sequence Feature Glyma.13g001200

Feature Type:gene_model
Chromosome:Gm13
Start:417299
stop:420713
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g001200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64660.1AT methionine gamma-lyase JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0019343GO-bp cysteine biosynthetic process via cystathionine EnsemblGenomesN/AIEA
GO:0019346GO-bp transsulfuration EnsemblGenomesN/AIEA
GO:0071266GO-bp 'de novo' L-methionine biosynthetic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003962GO-mf cystathionine gamma-synthase activity EnsemblGenomesN/AIEA
GO:0004123GO-mf cystathionine gamma-lyase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG0053 KOG Cystathionine beta-lyases/cystathionine gamma-synthases JGI N/AIEA
PTHR11808Panther TRANS-SULFURATION ENZYME FAMILY MEMBER JGI N/AIEA
PTHR11808:SF9Panther JGI N/AIEA
PF01053PFAM Cys/Met metabolism PLP-dependent enzyme JGI N/AIEA
PWY-701SoyCyc9 L-methionine degradation II Plant Metabolic Network ISS
GN7V-42135SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.13g001200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g001200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g10360 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g001200
>Glyma.13g001200.1 sequence-type=CDS polypeptide=Glyma.13g001200.1.p locus=Glyma.13g001200 ID=Glyma.13g001200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAAAGCGCGGTGGTGAACAGGAAGCGCAGCGGCACGGACGACGTCGTTTCGGAGAACGACGGAAAGAGGAAGAATGTGGTGGCACCCGACATGGACCCTGCGGCGGCATTGGCCTTGACGCGGCACGAGTTCGGGGAGCACGGTGGCGTGAACATGTCGATCGAGGCCTCGGCTACGTTCACGGTGATGGAGCCGGAGACCCTCTGCCGCATGTTCACTGGCGAGCTGGGCCCCGACCGCGACTTCTTCATCTACAGCCGCCACTTCAACCCGACGGTGCTCAACTTGGGCCGCCACATGGCCGCCCTGGAAGGCACGGAGGCCGCCTACTGCACCGCCAGCGGCATGGCCGCCATCTCCTCGGTCCTCCTCCAGCTCTGCAGCTCCGGCGGGCACGTGGTGGCCTCCACCACTCTCTACGGCGGGACCCACGCCCTCCTCACGCACTTCCTCCCCGGGAAATGCAACATTAGCACCACCTTCGTGGACATCAGTGATTTGGAAAGCGTGGAGAGTGCGATCGTGGAAGGGAAGACGAACGTCCTGTACTTCGAGTCCATGGCGAATCCGAGCCTGAAGGTCGCAAACATTCCGGAACTGTGCCGCGTGGGACACGCAAAGGGCGTCACAGTTGTCACCGACAACACCTTCGCTCCCATGGTCATCTCCCCCGCTCGTCTCGGCGCTGACGTCGTCGTTCACAGCATCTCCAAGTTTATCAGTGGGGGTGCTGATATTATTGCAGGGGCTGTGTGCGGGCCTGCGAGCCTAGTGAATTCGATGATGGACCTTCACGACGGGTCCCTGATGCTGCTGGGTCCAACAATGAATGCGAAGGTGGCGTTTGAACTGTCAGAAAGAATCCCACACTTGAGCCTTAGGATGAAGGAGCATTGCCACCGTGCGTTGGTGTTCGCCACAAGGCTCAAGAAATTAGGGTTGAAGGTGATCTACCCAGGCCTTGAAGACCACCCACAGCACGAATTGCTGAAATCAATAGCCAACAGGGAATATGGGTATGGTGGACTTCTTTGCATTGACATGGAAACGGTGGAGAGGGCAAACCTGTTGATGGCTCACTTGCAAAACGATGCTCAATTTGGATTCATGGCTGTTAGCTTGGGGTATTATGAGACCCTCATGTCCTGCTCTGGTAGCAGCACTAGCAGTGGGATGACTGAGGAGGAACAGAAGCTTGCCGGAATCTCCCCAGGCCTAGTAAGGATGTCAATTGGATACATTGGCACATTGGAGCAGAAATGGAGTCAGATGGAAATTGCACTCGATAGATTTCAGGAAAAGCAGCCACTAGTTTAA
Predicted protein sequences of Glyma.13g001200
>Glyma.13g001200.1.p sequence-type=predicted peptide transcript=Glyma.13g001200.1 locus=Glyma.13g001200 ID=Glyma.13g001200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAESAVVNRKRSGTDDVVSENDGKRKNVVAPDMDPAAALALTRHEFGEHGGVNMSIEASATFTVMEPETLCRMFTGELGPDRDFFIYSRHFNPTVLNLGRHMAALEGTEAAYCTASGMAAISSVLLQLCSSGGHVVASTTLYGGTHALLTHFLPGKCNISTTFVDISDLESVESAIVEGKTNVLYFESMANPSLKVANIPELCRVGHAKGVTVVTDNTFAPMVISPARLGADVVVHSISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHCHRALVFATRLKKLGLKVIYPGLEDHPQHELLKSIANREYGYGGLLCIDMETVERANLLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSGMTEEEQKLAGISPGLVRMSIGYIGTLEQKWSQMEIALDRFQEKQPLV*






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