SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29130.1 | AT | laccase 2 | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005507 | GO-mf | copper ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005507 | GO-mf | copper ion binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016722 | GO-mf | oxidoreductase activity, oxidizing metal ions | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| PTHR11709 | Panther | MULTI-COPPER OXIDASE | JGI | N/A | IEA |
| PTHR11709:SF9 | Panther | LACCASE-7-RELATED | JGI | N/A | IEA |
| PF00394 | PFAM | Multicopper oxidase | JGI | N/A | IEA |
| PF07731 | PFAM | Multicopper oxidase | JGI | N/A | IEA |
| PF07732 | PFAM | Multicopper oxidase | JGI | N/A | IEA |
| GN7V-48970 | SoyCyc9-rxn | laccase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| Lac56 | Laccase 56 |
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Glyma.13G338100 not represented in the dataset |
Glyma.13G338100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
>Glyma.13g338100.1 sequence-type=CDS polypeptide=Glyma.13g338100.1.p locus=Glyma.13g338100 ID=Glyma.13g338100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATTGGTGTGCTAATTATACATGTTCCTCCATGCTCACACCCGATCGATGTTCCAAGAGCTAAGGCGTCACTAGCTTCCTTAATTTGGACCTTTCCTGAGCTCGTGCTGCCTGCTATTTCAAACCATGGACGCGTTACTAGGCATTATCAGTTCGATGTGCGCATTAGCATTGCCTTACATCACTTACACGCTGTGCCACACAAAGAGCATGATTACTGTAAACGGGATGTAGGAGACAGATTAGTGGTTAAGGTTAACCATGTTCCAAAGAATATCACCATCCATTGGCATGGAGTGAGACAAGTACGTAGTGGATGGTCGGATGGACCATCGTACATAACTAAATGCCCCATACAAAGTGGTCAGAGCTATGTGTACAACTTGAGCATGGTTGGGCAAAAGAGGAACTCTATTCTGGCACGCACACCACTCGTGGTTAAGGGCTCTTCTGCATGGACCCCTCATACATTCAGCCTAAAGGTGAAAGCAGGGAAGTCATATCTTCTCCGTTTGATCAACGCTGCAGTGAACACTGGACTGTTTTTCAGCATAGCAAACCACATCATAACTGTTTTTGAAGCCGATGCTACTTACATTAAACCTTTCGACTCCGACATCATCCTCATTGGACAAGGACAAACTACAAACCGAGGCCATTTTTCACTGGCAAGGGCACCTTCGAACAATTCCACATTGGCTGGCATCCTAGAATACGATGACGATAACGATACCCCTGCTTCAAACCGTCCCATGTTGAAACCAACCCTTCCTGATATCAACGACACATCCTTTGTTTCCAATTTGAACACTAAATTTCGCAGTTTGAACAGTGCAAAGCACCCTGCGAATGTGCCCGAAACAGTTGACAAGAGTTTCTTCTTCACGATAGGTCTCGGGAGCATGCTCTGCCCAAGAAACCAAACGTGTGAAGGGCCTAATAACAGAACTAAATTCTCTGCCTCCATGAACAACATATCTTTCCCACTTCCTTCAGTGGCGATTCTTGAGAAACATTTCTCAGGGCAGGAGCAGGACAATAATGGTGTTTATTACACCACGGACTTCCCAGTTGTTTCTCTGAGAGCCTTTAACTACACGGGGACTCCCCCGAATAACACCATGGTGAAAAGTGGAACCAAGGTGGTGGTGATACCCTTTAACACGAGGGTGCAGGTGGTGTTGCAGGACACTAGGTGCAGAGAGTCATCCGTTACATCTTCATGGGTTCAACATGTTTCGTTAGGAACCGGTTGGGTTGCAATTCGCTTTCTCGCTGACGACCCAGGTGTTTGGCTGATGCACTGTCACATCGATGTGCACCTGAGTTGGGGAACGAAGTTGCCTCCTCCGCCAGCTGATCTCCCAAAGTGTTGA
>Glyma.13g338100.1.p sequence-type=predicted peptide transcript=Glyma.13g338100.1 locus=Glyma.13g338100 ID=Glyma.13g338100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MIGVLIIHVPPCSHPIDVPRAKASLASLIWTFPELVLPAISNHGRVTRHYQFDVRISIALHHLHAVPHKEHDYCKRDVGDRLVVKVNHVPKNITIHWHGVRQVRSGWSDGPSYITKCPIQSGQSYVYNLSMVGQKRNSILARTPLVVKGSSAWTPHTFSLKVKAGKSYLLRLINAAVNTGLFFSIANHIITVFEADATYIKPFDSDIILIGQGQTTNRGHFSLARAPSNNSTLAGILEYDDDNDTPASNRPMLKPTLPDINDTSFVSNLNTKFRSLNSAKHPANVPETVDKSFFFTIGLGSMLCPRNQTCEGPNNRTKFSASMNNISFPLPSVAILEKHFSGQEQDNNGVYYTTDFPVVSLRAFNYTGTPPNNTMVKSGTKVVVIPFNTRVQVVLQDTRCRESSVTSSWVQHVSLGTGWVAIRFLADDPGVWLMHCHIDVHLSWGTKLPPPPADLPKC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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