SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20580.1 | AT | COBRA-like protein 10 precursor | JGI | N/A | IEA |
| GO:0010215 | GO-bp | cellulose microfibril organization | EnsemblGenomes | N/A | IEA |
| GO:0010215 | GO-bp | cellulose microfibril organization | JGI | N/A | IEA |
| GO:0016049 | GO-bp | cell growth | EnsemblGenomes | N/A | IEA |
| GO:0016049 | GO-bp | cell growth | JGI | N/A | IEA |
| GO:0031225 | GO-cc | anchored component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0031225 | GO-cc | anchored component of membrane | JGI | N/A | IEA |
| PF04833 | PFAM | COBRA-like protein | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| COBL17 | Regulates cell wall expansion and cellulose depostion |
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Glyma.13G288300 not represented in the dataset |
Glyma.13G288300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g213400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g288300 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma13g36420 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g288300.1 sequence-type=CDS polypeptide=Glyma.13g288300.1.p locus=Glyma.13g288300 ID=Glyma.13g288300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAACTGCTTTATTAAAGCAGGTAACTTCTTCGTACTCAACAAAAATAATAACAGCTTGTTTGTTTCTCTTCTTGAACTGCCATGTTGGCTACGGCCAAAATGACTTTGAAAAATTTTCGTCCTTGTCGTCGCCGCCACCGCCTCTAATGACGGAGCTCGACGCCTGCAACGGTGTGTTTCTCACGTACGCGCTCCTTGGGCGCGTGAAGGAGTACCCGCACGTGAAGAACACGTCGAAGCAGGCGTGGGCGTTCAAGGCGGAGGCGTCCCTGACAAACGTCGGGGACGAGGAGGTGCAGGGGTGGAAGATGTACGTGGGGTTCCAGCACCGCGAGATTCTGGTCTCCGCCGACGGCGCCGTGCTCACCGACGCCGGGGACTTTCCGGCGGAGGTGGGGAACGGGACCACGATGATGGGGTCCACCGCGACGGACTTGAAGACCGCCATAGATACCGCCGGGGATATTGACCAGATGAGTGTGAGGATTCAGATGAAGGGGACGCAGTTTGGGTTGGGTGCTGGGGCTACGCCAATGCCTAAAACTATTCATCTTGAGAATGATGGCTTCAAATGCCCTGCACCCAGTCGAAGAGCCACGAGAATGTTCGTATGCTGCAGAAAGGACCCAAAAGTAAAAGCCAAGCAAGCTAAGAAAACAAAGTACCCACCTCGTCGCAAAGGAGACATAACCATAGCATACGACGTGCTCCAAGCCTTCCAGAACAACTACTACGCGCAAGTCACAATAGACAACAACCACCCATTAGGTCGTCTCGATCACTGGAACCTAACATGGGAATGGCAAAAGGGAGAATTCATATACTCCATGAAAGGAGCCTTTGCTCGCAGAAGAGACCCTTCTGAGTGCTTGTACGGCCTCGCAGGAAAATTCTACAAAGACATGGATTTCACAAACGTCGCAACCTGTCAAAAGAAGCCAACAATCTCTGATCTTCCATCAGAGAGAAAAGAAGATGAGAAAGTTGGAAAACTTCCTTGGTGTTGTAGGAATGGCACTGTTTTGCCTCCTATCATGGACAAGAACAAAGCTAGGTCAATGTTCCAGATGCAAGTGTTCAAAATTGCACCTGACACTGATAACAGAACTGCTCTCACTCCACCTTCAAAGTGGAACATTGATGGTGTCATTAACCCTAAATACAAGTGCAGTGCCCCAGTTAGGGTTGACCCACAAGTCTTCCCTGACCCTAGTGGGCTTAGTGCTATTAGCACAGCGGTTGCAAGTTGGCAAATAGTTTGCAACATCACAAAACCTAAGCCTCAAGAAAACCGTTGTTGTGTCTCTTTCTCAGCATTCTACAACGAATCAGCCATCCCTTGCAACACGTGTGCATGTGGGTGTGATGACACGAGGAAGTGCAGCTCTAGGGCTTCTCCGATGCTTCTTCCACCAGATGTTCTTCTTGTGCCGTTTGCTAACAGGTCCGTTAAGGCACGTGCATGGGCCAGGCTCAAGCACTTGCACGTACCGAGCAAGCTCCCTTGTGGGGACAATTGCCCCGTCAGCATAAACTGGCACGTGAGTTCTGATCACAGGGATGGATGGACAGCTAGGATCACACTTTTCAACTGGGAGGACTATTCCTTTGACGATTGGTTCACTGCAGTTCAGTTGAGGAGAACTTTCGAGGATTTTGAAGATGTGTATTCCTTCAATGGGACGAGGATTCCTGGTCTCAAAACTGTGTTCTTTGAAGGGTTAAAGGGTTTGAATTACTTGGCTGGAGAAACCAATGGAACACACGCTAATGACCCCAGGGTTCCAGGGAAACAACAATCTGTTATTTCTTTCAGCAAGAAGCATATAAAAGACTTCGATGTCACACATGATGGGTTCCCCACTAAGGTTTTCTTCAATGGAATGGAGTGTTCACTTCCTCCAATTAGACCTGCCAAAAGTTCAGGGCGCAAATCATCTTCCATCAGTGTCATTGCACTCGTTTTCACAGCTTTTGTGACTTTCTTGATGATCTAA
>Glyma.13g288300.1.p sequence-type=predicted peptide transcript=Glyma.13g288300.1 locus=Glyma.13g288300 ID=Glyma.13g288300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKTALLKQVTSSYSTKIITACLFLFLNCHVGYGQNDFEKFSSLSSPPPPLMTELDACNGVFLTYALLGRVKEYPHVKNTSKQAWAFKAEASLTNVGDEEVQGWKMYVGFQHREILVSADGAVLTDAGDFPAEVGNGTTMMGSTATDLKTAIDTAGDIDQMSVRIQMKGTQFGLGAGATPMPKTIHLENDGFKCPAPSRRATRMFVCCRKDPKVKAKQAKKTKYPPRRKGDITIAYDVLQAFQNNYYAQVTIDNNHPLGRLDHWNLTWEWQKGEFIYSMKGAFARRRDPSECLYGLAGKFYKDMDFTNVATCQKKPTISDLPSERKEDEKVGKLPWCCRNGTVLPPIMDKNKARSMFQMQVFKIAPDTDNRTALTPPSKWNIDGVINPKYKCSAPVRVDPQVFPDPSGLSAISTAVASWQIVCNITKPKPQENRCCVSFSAFYNESAIPCNTCACGCDDTRKCSSRASPMLLPPDVLLVPFANRSVKARAWARLKHLHVPSKLPCGDNCPVSINWHVSSDHRDGWTARITLFNWEDYSFDDWFTAVQLRRTFEDFEDVYSFNGTRIPGLKTVFFEGLKGLNYLAGETNGTHANDPRVPGKQQSVISFSKKHIKDFDVTHDGFPTKVFFNGMECSLPPIRPAKSSGRKSSSISVIALVFTAFVTFLMI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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