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Report for Sequence Feature Glyma.13G101100

Feature Type:gene_model
Chromosome:Gm13
Start:21624113
stop:21626203
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13G101100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57150.2AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR11514Panther MYC JGI N/AIEA
PTHR11514:SF7Panther JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Proteins Associated with Glyma.13G101100
LocusGene SymbolProtein Name
bHLH35 PREDICTED: transcription factor bHLH35-like

Expression Patterns of Glyma.13G101100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13G101100
ParalogEvidenceComments
Glyma.17g058600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13G101100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g101100 Wm82.a4.v1ISS As supplied by JGI
Glyma13g00480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13G101100
>Glyma.13g101100.1 sequence-type=CDS polypeptide=Glyma.13g101100.1.p locus=Glyma.13g101100 ID=Glyma.13g101100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAATATTGGTGAGGATCAGTACGGCTACTTGCCGGAGACCGACCTGTTTTTCCCAAACGAAGACCTTGGCAGCTGGGCAATAATGGATGGGGAAGCGGTCTCTTGGTACTATGATTCAAGCTCCCCGGACGGCACCGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTGGCACTTAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATAGAGTACATCCAGCACTTGCATGAACAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTAGAATCTAGGAATAAGTTCAAAAATCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCTAAGAAGAAGAAAACAGAACACCTATTTGATTCTCTCAGTTCAAGAAATTCCCCATCAATTGAAATAATTGAGCTGAGGGTAACATACATGAGAGAGAAGACGTTTGTGGTGAACTTGACATGTAGTAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTCAAAGTCATTGCGGCCAATATCACATCTTTTTCAGGCACGCTTTTGAAGAAGACAGCCTTCATCGAGGTTAGTCTCCCTCCCATTTTGCCCTTCTTAAATTAA
Predicted protein sequences of Glyma.13G101100
>Glyma.13g101100.1.p sequence-type=predicted peptide transcript=Glyma.13g101100.1 locus=Glyma.13g101100 ID=Glyma.13g101100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENIGEDQYGYLPETDLFFPNEDLGSWAIMDGEAVSWYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQHLHEQEKRIQAEILDLESRNKFKNPTYEFDQDLPILLRSKKKKTEHLFDSLSSRNSPSIEIIELRVTYMREKTFVVNLTCSKRTDTMVKLCEVFESLKLKVIAANITSFSGTLLKKTAFIEVSLPPILPFLN*






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