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Report for Sequence Feature Glyma.13G034100

Feature Type:gene_model
Chromosome:Gm13
Start:10667998
stop:10673471
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13G034100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20240.1AT K-box region and MADS-box transcription factor family protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
KOG0014 KOG MADS box transcription factor JGI N/AIEA
PTHR11945Panther MADS BOX PROTEIN JGI N/AIEA
PTHR11945:SF134Panther JGI N/AIEA
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI N/AIEA
PF01486PFAM K-box region JGI N/AIEA

Proteins Associated with Glyma.13G034100
LocusGene SymbolProtein Name
PIa Pistillata gene a

Expression Patterns of Glyma.13G034100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13G034100
ParalogEvidenceComments
Glyma.14g155100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13G034100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g034100 Wm82.a4.v1ISS As supplied by JGI
Glyma13g09660 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13G034100
>Glyma.13g034100.2 sequence-type=transcript locus=Glyma.13g034100 ID=Glyma.13g034100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACACAAGTTTACAAACCTTTCAAATCAGAGACACTCTCCTCCGGGAATCATCCACAGCCACCCTCTTCTAACTTCTCCATTTCACAAGGAAGAAGATCAGAGAACATTTAGAACAAAAAAGAGAGTTTGAGAAATGGGGAGGGGTAAGATTGAGATCAAGAGGATAGAGAACTCAAGCAACAGGCAAGTTACATACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCGCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGTGATGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAACTGGTCTAGTCAGTGTCCGCGAGAAACAGATGGATGTATACAGGATGCTCAGGAGAAACGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGAGGAAGGTGCGAGAGAAGTGGACAATGGGTTTGATCAAAGCGTAAGAGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAAAGGATCTAATATATAACTCTTGAATTCAAAAACTTCATCTTGGTGCTGTCAAAATCGTATGTGTCACAACTCTTTTAAGTATATGTTGGTATCTGGTTGTAAGTAATAAACTAAGCAACTGACCTTTGGCTTTAATTGTGAAGTTACAACATCTTGTGTCTCCAACCTTATTGGGTAATCATATGACATCTTAGTGTGTTTGTCTGAGT
Coding sequences of Glyma.13G034100
>Glyma.13g034100.1 sequence-type=CDS polypeptide=Glyma.13g034100.1.p locus=Glyma.13g034100 ID=Glyma.13g034100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGGGGTAAGATTGAGATCAAGAGGATAGAGAACTCAAGCAACAGGCAAGTTACATACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCGCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGTGATGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAACTGGTCTAGTCAGTGTCCGCGAGAAACAGATGGATGTATACAGGATGCTCAGGAGAAACGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGAGGAAGGTGCGAGAGAAGTGGACAATGGGTTTGATCAAAGCGTAAGAGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAAAGGATCTAA

>Glyma.13g034100.2 sequence-type=CDS polypeptide=Glyma.13g034100.2.p locus=Glyma.13g034100 ID=Glyma.13g034100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGGGGTAAGATTGAGATCAAGAGGATAGAGAACTCAAGCAACAGGCAAGTTACATACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCGCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGTGATGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAACTGGTCTAGTCAGTGTCCGCGAGAAACAGATGGATGTATACAGGATGCTCAGGAGAAACGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGAGGAAGGTGCGAGAGAAGTGGACAATGGGTTTGATCAAAGCGTAAGAGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAAAGGATCTAA
Predicted protein sequences of Glyma.13G034100
>Glyma.13g034100.1.p sequence-type=predicted peptide transcript=Glyma.13g034100.1 locus=Glyma.13g034100 ID=Glyma.13g034100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGDDINSLNYKELMALEDALETGLVSVREKQMDVYRMLRRNDKILEEENRELNFLWQQRLAEEGAREVDNGFDQSVRDYNSHMPFAFRVQPMQPNLQERI*

>Glyma.13g034100.2.p sequence-type=predicted peptide transcript=Glyma.13g034100.2 locus=Glyma.13g034100 ID=Glyma.13g034100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGDDINSLNYKELMALEDALETGLVSVREKQMDVYRMLRRNDKILEEENRELNFLWQQRLAEEGAREVDNGFDQSVRDYNSHMPFAFRVQPMQPNLQERI*






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